Archive for April 28th, 2012

How to solve “Incorrect key file for table ‘/tmp/#sql_9315.MYI’; try to repair it” mysql start up error

Saturday, April 28th, 2012

When a server hard disk scape gets filled its common that Apache returns empty (no content) pages…
This just happened in one server I administer. To restore the normal server operation I freed some space by deleting old obsolete backups.
Actually the whole reasons for this mess was an enormous backup files, which on the last monthly backup overfilled the disk empty space.

Though, I freed about 400GB of space on the the root filesystem and on a first glimpse the system had plenty of free hard drive space, still restarting the MySQL server refused to start up properly and spit error:

Incorrect key file for table '/tmp/#sql_9315.MYI'; try to repair it" mysql start up error

Besides that there have been corrupted (crashed) tables, which reported next to above error.
Checking in /tmp/#sql_9315.MYI, I couldn't see any MYI – (MyISAM) format file. A quick google look up revealed that this error is caused by not enough disk space. This was puzzling as I can see both /var and / partitions had plenty of space so this shouldn't be a problem. Also manally creating the file /tmp/#sql_9315.MYI with:

server:~# touch /tmp/#sql_9315.MYI

Didn't help it, though the file created fine. Anyways a bit of a closer examination I've noticed a /tmp filesystem mounted besides with the other file system mounts ????
You can guess my great amazement to find this 1 Megabyte only /tmp filesystem hanging on the server mounted on the server.

I didn't mounted this 1 Megabyte filesystem, so it was either an intruder or some kind of "weird" bug…
I digged in Googling to see, if I can find more on the error and found actually the whole mess with this 1 mb mounted /tmp partition is caused by, just recently introduced Debian init script /etc/init.d/mountoverflowtmp.
It seems this script was introduced in Debian newer releases. mountoverflowtmp is some kind of emergency script, which is triggered in case if the root filesystem/ space gets filled.
The script has only two options:

# /etc/init.d/mountoverflowtmp
Usage: mountoverflowtmp [start|stop]

Once started what it does it remounts the /tmp to be 1 megabyte in size and stops its execution like it never run. Well maybe, the developers had something in mind with introducing this script I will not argue. What I should complain though is the script design is completely broken. Once the script gets "activated" and does its job. This 1MB mount stays like this, even if hard disk space is freed on the root partition – / ….

Hence to cope with this unhandy situation, once I had freed disk space on the root partition for some reason mountoverflowtmp stop option was not working,
So I had to initiate "hard" unmount:

server:~# mount -l /tmp

Also as I had a bunch of crashed tables and to fix them, also issued on each of the broken tables reported on /etc/init.d/mysql start start-up.

server:~# mysql -u root -p
mysql> use Database_Name;
mysql> repair table Table_Name extended;
....

Then to finally solve the stupid Incorrect key file for table '/tmp/#sql_XXYYZZ33444.MYI'; try to repair it error, I had to restart once again the SQL server:

Stopping MySQL database server: mysqld.
Starting MySQL database server: mysqld.
Checking for corrupt, not cleanly closed and upgrade needing tables..
root@server:/etc/init.d#

Tadadadadam!, SQL now loads and works back as before!

How to search text strings only in hidden files dot (.) files within a directory on Linux and FreeBSD

Saturday, April 28th, 2012

how-to-search-hidden-files-linux-freebsd-logo_grep
If there is necessity to look for a string in all hidden files with all sub-level subdirectories (be aware this will be time consuming and CPU stressing) use:
 

hipo@noah:~$ grep -rli 'PATH' .*

./.gftp/gftprc
./.gftp/cache/cache.OOqZVP
….

Sometimes its necessery to only grep for variables within the first-level directories (lets say you would like to grep a 'PATH' variable set, string within the $HOME directory, the command is:

hipo@noah:~$ grep PATH .[!.]*

.profile:PATH=/bin:/usr/bin/:${PATH}
.profile:export PATH
.profile:# set PATH so it includes user's private bin if it exists
.profile: PATH="$HOME/bin:$PATH"
.profile.language-env-bak:# set PATH so it includes user's private bin if it exists
.profile.language-env-bak: PATH="$HOME/bin:$PATH"
.viminfo:?/PATH.xcyrillic: XNLSPATH=/usr/X11R6/lib/X11/nls
.xcyrillic: export XNLSPATH

The regular expression .[!.]*, means exclude any file or directory name starting with '..', e.g. match only .* files

Note that to use the grep PATH .[!.]* on FreeBSD you will have to use this regular expression in bash shell, the default BSD csh or tsch shells will not recognize the regular expression, e.g.:

grep PATH '.[!.]*'
grep: .[!.]*: No such file or directory

Hence on BSD, if you need to look up for a string within the home directory, hidden files: .profile .bashrc .bash_profile .cshrc run it under bash shell:

freebsd# /usr/local/bin/bash
[root@freebsd:/home/hipo]# grep PATH .[!.]*

.bash_profile:# set PATH so it includes user's private bin if it exists
.bash_profile:# PATH=~/bin:"${PATH}"
.bash_profile:# do the same with …

Another easier to remember, alternative grep cmd is:

hipo@noah:~$ grep PATH .*
.profile:PATH=/bin:/usr/bin/:${PATH}
.profile:export PATH
.profile:# set PATH so it includes user's private bin if it exists
.profile: PATH="$HOME/bin:$PATH"
….

Note that grep 'string' .* is a bit different in meaning, as it will not prevent grep to match filenames with names ..filename1, ..filename2 etc.
Though grep 'string' .* will work note that it will sometimes output some unwanted matches if filenames with double dot in the beginning of file name are there …
That's all folks 🙂