Posts Tagged ‘mysql database server’

Allowing MySQL users access from all hosts – Fixing mysql ERROR 1045 (28000): Access denied for user ‘root’@’remote-admin.com’ (using password: YES)

Friday, June 20th, 2014

mysql_allow_access-from-remote-any-host-fix-access-error-after-sql-migration

I recently migrated MySQL database server from host A to host B (remotesystemadministration.com), because I wanted to have the mysql database server on a separate machine (have separation of server running services and have a dedicated mysql server).

MySQL server host (running on localhost previously was set from my mysql config my.cnf to listen and serve connections on localhost with

bind-address = 127.0.0.1

). MySQL is used by a Tomcat running Java application on localhost and my task was to set the Tomcat to use the MySQL database remotely to MySQL host B (new remote hostname where MySQL is moved is  remotesystemadminsitration.com and is running on IP 83.228.93.76).

Migration from MySQL Db server 1 (host A) to MySQL Db server 2 (host B) is done by binary copying the mysql database directory which in this case is (as it is a Debian server installed MySQL), the standard directory where mysql stores its database data is /var/lib/mysql ( datadir = /var/lib/mysql in /etc/mysql/my.cnf)

Binary copying of data from MySQL db (host A) to MySQL Db (host B) is done with rsync

After migrating and trying to login on migrated mysql  database on remotesystemadministration.net with mysql cli client:

remotesysadmin:~$ mysql -u root -p

I got following error:
 

ERROR 1045 (28000): Access denied for user 'root'@'remotesystemadministration.com' (using password: YES)


To fix the issue I had to login remotely from old migration server mysql (host A) cli:

mysql:~$ mysql -u root -p -h remotesystemadministration.com

and  run SQL commands:

GRANT ALL PRIVILEGES ON *.* TO 'root'@'remotesystemadministration.com' WITH GRANT OPTION;
GRANT USAGE ON *.* TO 'root'@'remotesystemadministration.com' IDENTIFIED BY 'secret-mysql-pass';
FLUSH PRIVILEGES;

Query OK, 0 rows affected (0.03 sec)
Query OK, 0 rows affected (0.00 sec)
Query OK, 0 rows affected (0.00 sec)


Another way to solve the problem is to add the root user to be able to connect from any host (Enable MySQL root access from all host), to do so issue:

GRANT ALL PRIVILEGES ON *.* TO 'root'@'%' IDENTIFIED BY 'password';
FLUSH PRIVILEGES;

Note: In newer version of MySQL, flush privileges could be omitted.

Another approach if you want to substitute access from localhost for all users and enable all users to be able to authenticate to mysql remotely is to execute SQL Query:

UPDATE USER SET host='%' WHERE host='localhost';

Allowing all users to be able to connect from anywhere on the internet is a very bad security practice anyways, if you already have a tight firewall setup and you can only access the server via specific remote IP addresses allowing MySQL access from all hosts / ips should be ok.

How to tune MySQL Server to increase MySQL performance using mysqltuner.pl and Tuning-primer.sh

Tuesday, August 9th, 2011

MySQL Easy performance tuning with mysqltuner.pl and Tuning-primer.sh scripts

Improving MySQL performance is crucial for improving a website responce times, reduce server load and improve overall work efficiency of a mysql database server.

I’ve seen however many Linux System administrators who does belittle or completely miss the significance of tuning a newly installed MySQL server installation.
The reason behind that is probably caused by fact that many people think MySQL config variables, would not significantly improve performance and does not pay back for optimization efforts. Moreover there are a bunch of system admins who has to take care for numerous services so they don’t have time to get good knowledge to optimize MySQL servers.
Thus many admins and webmasters nowdays, think optimizations depend mostly on the side of the website programmers.
It’s also sometimes falsely believed that optimizing a MySQL server could reduce the overall server stability.

With the boom of Internet website building and internet marketing, many webmasters emerged and almost anybody with almost no knowledge on GNU/Linux or minimal or no knowledge on PHP can start his Online store, open a blog or create a website powered by some CMS like joomla.
Thus nowdays many servers even doesn’t have a hired system administrators but are managed by people whose knowledge on *Nix is almost next to zero, this is another reason why dozens of MySQL installations online are a default ones and are not taking a good advantage of the server hardware.

The incrase of website visitors leads people servers expectations for hardware also to grow, thus many companies simply buy a new hardware instead of taking the few time to investigate on how current server hardware can be utilized better.
In that manner of thought I though it will be a good idea to write this small article on Tuning mysql servers with two scripts Tuning-primer.sh and mysqltuner.pl.
The scripts are ultra easy to use and does not require only a minimal knowledge on MySQL, Linux or (*BSD *nix if sql is running on BSD).
Tuning-primer.sh and mysqltuner.pl are therefore suitable for a quick MySQL server optimizations to even people who are no computer experts.

I use this two scripts for MySQL server optimizations on almost every new configured GNU/Linux with a MySQL backend.
Use of the script comes to simply download with wget, lynx, curl or some other web client and execute it on the server host which is already running the MySQL server.

Here is an example of how simple it is to run the scripts to Optimize MySQL:

debian:~# perl mysqltuner.pl
>> MySQLTuner 1.2.0 - Major Hayden >major@mhtx.net<
>> Bug reports, feature requests, and downloads at http://mysqltuner.com/
>> Run with '--help' for additional options and output filtering

——– General Statistics ————————————————–
[–] Skipped version check for MySQLTuner script
[OK] Currently running supported MySQL version 5.1.49-3
[OK] Operating on 64-bit architecture

——– Storage Engine Statistics ——————————————-
[–] Status: +Archive -BDB -Federated +InnoDB -ISAM -NDBCluster
[–] Data in MyISAM tables: 6G (Tables: 952)
[!!] InnoDB is enabled but isn’t being used
[!!] Total fragmented tables: 12

——– Security Recommendations ——————————————-
[OK] All database users have passwords assigned

——– Performance Metrics ————————————————-
[–] Up for: 1d 2h 3m 35s (68M q [732.193 qps], 610K conn, TX: 49B, RX: 11B)
[–] Reads / Writes: 76% / 24%
[–] Total buffers: 512.0M global + 2.8M per thread (2000 max threads)
[OK] Maximum possible memory usage: 6.0G (25% of installed RAM)
[OK] Slow queries: 0% (3K/68M)
[OK] Highest usage of available connections: 7% (159/2000)
[OK] Key buffer size / total MyISAM indexes: 230.0M/1.7G
[OK] Key buffer hit rate: 97.8% (11B cached / 257M reads)
[OK] Query cache efficiency: 76.6% (46M cached / 61M selects)
[!!] Query cache prunes per day: 1822075
[OK] Sorts requiring temporary tables: 0% (1K temp sorts / 2M sorts)
[!!] Joins performed without indexes: 63635
[OK] Temporary tables created on disk: 1% (26K on disk / 2M total)
[OK] Thread cache hit rate: 99% (159 created / 610K connections)
[!!] Table cache hit rate: 4% (1K open / 43K opened)
[OK] Open file limit used: 17% (2K/16K)
[OK] Table locks acquired immediately: 99% (36M immediate / 36M locks)

——– Recommendations —————————————————–
General recommendations:
Add skip-innodb to MySQL configuration to disable InnoDB
Run OPTIMIZE TABLE to defragment tables for better performance
Enable the slow query log to troubleshoot bad queries
Increasing the query_cache size over 128M may reduce performance
Adjust your join queries to always utilize indexes
Increase table_cache gradually to avoid file descriptor limits
Variables to adjust:
query_cache_size (> 256M) [see warning above] join_buffer_size (> 256.0K, or always use indexes with joins) table_cache (> 7200)

You see there are plenty of things, the script reports, for the unexperienced most of the information can be happily skipped without need to know the cryptic output, the section of importance here is Recommendations for some clarity, I’ve made this section to show up bold.

The most imporant things from the Recommendations script output is actually the lines who give suggestions for incrase of certain variables for MySQL.In this example case this are the last three variables:
query_cache_size,
join_buffer_size and
table_cache

All of these variables are tuned from /etc/mysql/my.cnf (on Debian) and derivatives distros and from /etc/my.cnf on RHEL, CentOS, Fedora and the other RPM based Linux distributions.

On some custom server installs my.cnf is also located in /usr/local/mysql/etc/ or some other a bit more unstandard location 😉

Anyways now having the Recommendation from the script, it’s necessery to edit my.cnf and try to double the values for the suggested variables.

First, I check if all the suggested variables are existent in my config with grep , if they’re not then I’ll simply add the variable with doubled size of the suggested values.
P.S: One note here is sometimes some values which are configured, are the default value for the MySQL server and does not have a record in my.cnf

debian:~# grep -E 'query_cache_size|join_buffer_size|table_cache' /etc/mysql/my.cnf table_cache = 7200
query_cache_size = 256M
join_buffer_size = 262144

All of my variables are in the config so, now edit my.cnf and set values to:
table_cache = 14400
query_cache_size = 512M
join_buffer_size = 524288

I always, however preserve the old variable’s value, because sometimes raising the value might create problem and the MySql server might be unable to restart properly.
Thus before going with adding the new values make sure the old ones are commented with # , e.g.:
#table_cache = 7200
#query_cache_size = 256M
#join_buffer_size = 262144

I would recommend vim as editor of choice while editing my.cnf as vim completely rox 😉 If you’re not acquainted to vim use nano or mcedit or your editor of choice 😉 :

debian:~# vim /etc/mysql/my.cnf
...

Assuming that the changes are made, it’s time to restart MySQL to make sure the new values are read by the SQL server.

debian:~# /etc/init.d/mysql restart
* Stopping MySQL database server mysqld [ OK ]
* Starting MySQL database server mysqld [ OK ]
Checking for tables which need an upgrade, are corrupt or were not closed cleanly.

If mysql server fails, however to restart, make sure immediately you reverse back the changed variables to the commented values and restart once again via mysql init script to make server load.

Afterwards start adding the values one by one until find out which one is causing the mysqld to fail.

Now the second script (Tuning-primer.sh) is also really nice for MySQL performance optimizations are necessery. However it’s less portable (as it’s written in bash scripting language).
Consider running this script among different GNU/Linux distributious (especially the newer ones) might produce errors.
Tuning-primer.sh requires some minor code changes to be able to run on FreeBSD, NetBSD and OpenBSD *nices.

The way Tuning-primer.sh works is precisely like mysqltuner.pl , one runs it it gives some info about current running MySQL server and based on certain factors gives suggestions on how increasing or decresing certain my.cnf variables could reduce sql query bottlenecks, solve table locking issues as well as generally improve INSERT, UPDATE query times.

Here is an example output from tuning-primer.sh run on another server:

server:~# wget http://www.pc-freak.net/files/Tuning-primer.sh
...
server:~# sh Tuning-primer.sh
-- MYSQL PERFORMANCE TUNING PRIMER --
- By: Matthew Montgomery -

MySQL Version 5.0.51a-24+lenny5 x86_64

Uptime = 8 days 10 hrs 19 min 8 sec
Avg. qps = 179
Total Questions = 130851322
Threads Connected = 1

Server has been running for over 48hrs.
It should be safe to follow these recommendations

To find out more information on how each of these
runtime variables effects performance visit:
http://dev.mysql.com/doc/refman/5.0/en/server-system-variables.html

SLOW QUERIES
Current long_query_time = 1 sec.
You have 16498 out of 130851322 that take longer than 1 sec. to complete
The slow query log is NOT enabled.
Your long_query_time seems to be fine

MAX CONNECTIONS
Current max_connections = 2000
Current threads_connected = 1
Historic max_used_connections = 85
The number of used connections is 4% of the configured maximum.
Your max_connections variable seems to be fine.

WORKER THREADS
Current thread_cache_size = 128
Current threads_cached = 84
Current threads_per_sec = 0
Historic threads_per_sec = 0
Your thread_cache_size is fine

MEMORY USAGE
Tuning-primer.sh: line 994: let: expression expected
Max Memory Ever Allocated : 741 M
Configured Max Memory Limit : 5049 M
Total System Memory : 23640 M

KEY BUFFER
Current MyISAM index space = 1646 M
Current key_buffer_size = 476 M
Key cache miss rate is 1 / 56
Key buffer fill ratio = 90.00 %
You could increase key_buffer_size
It is safe to raise this up to 1/4 of total system memory;
assuming this is a dedicated database server.

QUERY CACHE
Query cache is enabled
Current query_cache_size = 64 M
Current query_cache_used = 38 M
Current Query cache fill ratio = 59.90 %

SORT OPERATIONS
Current sort_buffer_size = 2 M
Current record/read_rnd_buffer_size = 256.00 K
Sort buffer seems to be fine

JOINS
Current join_buffer_size = 128.00 K
You have had 111560 queries where a join could not use an index properly
You have had 91 joins without keys that check for key usage after each row
You should enable “log-queries-not-using-indexes”
Then look for non indexed joins in the slow query log.
If you are unable to optimize your queries you may want to increase your
join_buffer_size to accommodate larger joins in one pass.

TABLE CACHE
Current table_cache value = 3600 tables
You have a total of 798 tables
You have 1904 open tables.
The table_cache value seems to be fine

TEMP TABLES
Current tmp_table_size = 128 M
1% of tmp tables created were disk based
Created disk tmp tables ratio seems fine

TABLE SCANS
Current read_buffer_size = 128.00 K
Current table scan ratio = 797 : 1
read_buffer_size seems to be fine

TABLE LOCKING
Current Lock Wait ratio = 1 : 1782
You may benefit from selective use of InnoDB.

As seen from script output, there are certain variables which might be increased a bit for better SQL performance, one such variable as suggested is key_buffer_size(You could increase key_buffer_size)

Now the steps to make the tunings to my.cnf are precisely the same as with mysqltuner.pl, e.g.:
1. Preserve old config variables which will be changed by commenting them
2. Double value of current variables in my.cnf suggested by script
3. Restart Mysql server via /etc/init.d/mysql restart cmd.
4. If mysql runs fine monitor mysql performance with mtop or mytop for at least 15 mins / half an hour.

if all is fine run once again the tuning scripts to see if there are no further improvement suggestions, if there are more follow the 4 steps described procedure once again.

It’s also a good idea that these scripts are periodically re-run on the server like once per few months as changes in SQL queries amounts and types will require changes in MySQL operational variables.
The authors of these nice scripts has done great job and have saved us a tons of nerves time, downtimes and money spend on meaningless hardware. So big thanks for the awesome scripts guys 😉
Finally after hopefully succesful deployment of changes, enjoy the incresed SQL server performance 😉

Installing the phpbb forum on Debian (Squeeze/Sid) Linux

Saturday, September 11th, 2010

howto-easily-install-phpbb-on-debian-gnu-linux

I've just installed the phpbb forum on a Debian Linux because we needed a goodquick to install communication media in order to improve our internal communication in a student project in Strategic HR we're developing right now in Arnhem Business School.

Here are the exact steps I followed to have a properly it properly instlled:

1. Install the phpbb3 debian package
This was pretty straight forward:

debian:~# apt-get install phpbb3

At this point of installation I've faced a dpkg-reconfigure phpbb deb package configuration issue:
I was prompted to pass in the credentials for my MySQL password right after I've selected the MySQL as my preferred database back engine.
I've feeded my MySQL root password as well as my preferred forum database name, however the database installation failed because, somehow the configuration procedure tried to connect to my MySQL database with the htcheck user.
I guess this has to be a bug in the package itself or something from my previous installation misconfigured the way the debian database backend configuration was operating.
My assumption is that my previously installed htcheck package or something beforehand I've done right after the htcheck and htcheck-php packages installation.

after the package configuration failed still the package had a status of properly installed when I reviewed it with dpkg
I've thought about trying to manually reconfigure it using the dpkg-reconfigure debian command and I gave it a try like that:

debian:~# dpkg-reconfigure phpbb3

This time along with the other fields I've to fill in the ncurses interface I was prompted for a username before the password prompted appeared.
Logically I tried to fill in the root as it's my global privileges MySQL allowed user.
However that didn't helped at all and again the configuration tried to send the credentials with user htcheck to my MySQL database server.
To deal with the situation I had to approach it in the good old manual way.

2. Manually prepare / create the required phpbb forum database

To completet that connected to the MySQL server with the mysql client and created the proper database like so:

debian:~# mysql -u root -p
mysql>
CREATE database phpbb3forum;

3. Use phpmyadmin or the mysql client command line to create a new user for the phpbb forum

Here since adding up the user using the phpmyadmin was a way easier to do I decided to go that route, anyways using the mysql cli is also an option.

From phpmyadmin It's pretty easy to add a new user and grant privileges to a certain database, to do so navigate to the following database:

Privileges -> -> Add a new user ->

Now type your User name: , Host , Password , Re-type password , also for a Host: you have to choose Local from the drop down menu.

Leave the Database for user field empty as we have already previously created our desired database in step 2 of this article

Now press the "Go" button and the user will get created.

Further after choose the Privileges menu right on the bottom of the page once again, select through the checkbox the username you have just created let's say the previously created user is phpbb3

Go to Action (There is a picture with a man and a pencil on the right side of this button

Scroll down to the page part saying Database-specific privileges and in the field Add privileges on the following database: fill in your previosly created database name in our case it's phpbb3forum

and then press the "Go" button once again.
A page will appear where you will have to select the exact privileges you would like to grant on the specific selected database.
For some simplicity just check all the checkbox to grant as many privilegs to your database as you could.
Then again you will have to press the "Go" button and there you go you should have already configured an username and database ready to go with your new phpbb forum.

4. Create a virtualhost if you would like to have the forum as a subdomain or into a separate domain

If you decide to have the forum on a separate sub-domain or domain as I did you will have to add some kind of Virtualhost into either your Apache configuration /etc/apache2/apache2.conf or into where officially the virutualhosts are laid in Debian Linux in /etc/apache2/sites-available
I've personally created a new file like for instance /etc/apache2/sites-available/mysubdomain.mydomain.com

Here is an example content of the new Virtualhost:

<VirtualHost *>
ServerAdmin admin-email@domain.com
ServerName mysubdomain.domain.com

# Indexes + Directory Root.
DirectoryIndex index.php index.php5 index.htm index.html index.pl index.cgi index.phtml index.jsp index.py index.asp

DocumentRoot /usr/share/phpbb3/www/

# Logfiles
ErrorLog /var/log/apache2/yourdomain/error.log
CustomLog /var/log/apache2/yourdomain/access.log combined
# CustomLog /dev/null combined
<Directory /usr/share/phpbb3/www/>
Options FollowSymLinks MultiViews -Includes ExecCGI
AllowOverride All
Order allow,deny
allow from all </Directory>
</VirtualHost>

In above Virtualhost just change the values for ServerAdmin , ServerName , DocumentRoot , ErrorLog , CustomLog and Directory declaration to adjust it to your situation.

5. Restart the Apache webserver for the new Virtualhost to take affect

debian:~# /etc/init.d/apache2 restart

Now accessing your http://mysubdomain.domain.com should display the installed phpbb3 forum
The default username and password for your forum you can use straight are:

username: admin
password: admin

So far so good you by now have the PHPBB3 forum properly installed and running, however if you try to Register a new user in the forum you will notice that it's impossible because of a terrible ugly message reading:

Sorry but this board is currently unavailable.

I've spend few minutes online to scrape through the forums before I can understand what I have to stop that annoying message from appearing and allow new users to register in the phpbb forum

The solution came natural and was a setting that had to be changed with the forum admin account, thus login as admin and look at the bottom of the page, below the text reading Powered by phpBB © 2000, 2002, 2005, 2007 phpBB Group you will notice a link with Administration Control Panel
just press there a whole bunch of menus will appear on the screen allowing you to do numerous things, however what you will have to do is go to
Board Settings -> Disable Board

and change the radio button there to say No

That's all now your forum will be ready to go and your users can freely register and if the server where the forum is installed has an already running mail server, they will receive an emails with a registration data concerning their new registrations in your new phpbb forum.
Cheers and Enjoy your new shiny phpbb Forum 🙂