Posts Tagged ‘mysql server’

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‘host-name’ is blocked because of many connection errors; unblock with ‘mysqladmin flush-hosts’

Sunday, May 20th, 2012

mysql-logo-host-name-blocked-because-of-many-connection-errors
My home run machine MySQL server was suddenly down as I tried to check my blog and other sites today, the error I saw while trying to open, this blog as well as other hosted sites using the MySQL was:

Error establishing a database connection

The topology, where this error occured is simple, I have two hosts:

1. Apache version 2.0.64 compiled support externally PHP scripts interpretation via libphp – the host runs on (FreeBSD)

2. A Debian GNU / Linux squeeze running MySQL server version 5.1.61

The Apache host is assigned a local IP address 192.168.0.1 and the SQL server is running on a host with IP 192.168.0.2

To diagnose the error I've logged in to 192.168.0.2 and weirdly the mysql-server was appearing to run just fine:
 

debian:~# ps ax |grep -i mysql
31781 pts/0 S 0:00 /bin/sh /usr/bin/mysqld_safe
31940 pts/0 Sl 12:08 /usr/sbin/mysqld –basedir=/usr –datadir=/var/lib/mysql –user=mysql –pid-file=/var/run/mysqld/mysqld.pid –socket=/var/run/mysqld/mysqld.sock –port=3306
31941 pts/0 S 0:00 logger -t mysqld -p daemon.error
32292 pts/0 S+ 0:00 grep -i mysql

Moreover I could connect to the localhost SQL server with mysql -u root -p and it seemed to run fine. The error Error establishing a database connection meant that either something is messed up with the database or 192.168.0.2 Mysql port 3306 is not properly accessible.

My first guess was something is wrong due to some firewall rules, so I tried to connect from 192.168.0.1 to 192.168.0.2 with telnet:
 

freebsd# telnet 192.168.0.2 3306
Trying 192.168.0.2…
Connected to jericho.
Escape character is '^]'.
Host 'webserver' is blocked because of many connection errors; unblock with 'mysqladmin flush-hosts'
Connection closed by foreign host.

Right after the telnet was initiated as I show in the above output the connection was immediately closed with the error:

Host 'webserver' is blocked because of many connection errors; unblock with 'mysqladmin flush-hosts'Connection closed by foreign host.

In the error 'webserver' is my Apache machine set hostname. The error clearly states the problems with the 'webserver' apache host unable to connect to the SQL database are due to 'many connection errors' and a fix i suggested with mysqladmin flush-hosts

To temporary solve the error and restore my normal connectivity between the Apache and the SQL servers I logged I had to issue on the SQL host:

mysqladmin -u root -p flush-hostsEnter password:

Thogh this temporar fix restored accessibility to the databases and hence the websites errors were resolved, this doesn't guarantee that in the future I wouldn't end up in the same situation and therefore I looked for a permanent fix to the issues once and for all.

The permanent fix consists in changing the default value set for max_connect_error in /etc/mysql/my.cnf, which by default is not too high. Therefore to raise up the variable value, added in my.cnf in conf section [mysqld]:

debian:~# vim /etc/mysql/my.cnf
...
max_connect_errors=4294967295

and afterwards restarted MYSQL:

debian:~# /etc/init.d/mysql restart
Stopping MySQL database server: mysqld.
Starting MySQL database server: mysqld.
Checking for corrupt, not cleanly closed and upgrade needing tables..

To make sure the assigned max_connect_errors=4294967295 is never reached due to Apache to SQL connection errors, I've also added as a cronjob.

debian:~# crontab -u root -e
00 03 * * * mysqladmin flush-hosts

In the cron I have omitted the mysqladmin -u root -p (user/pass) input options because for convenience I have already stored the mysql root password in /root/.my.cnf

Here is how /root/.my.cnf looks like:

debian:~# cat /root/.my.cnf
[client]
user=root
password=a_secret_sql_password

Now hopefully, this would permanently solve SQL's 'failure to accept connections' due to too many connection errors for future.

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Posted in MySQL, System Administration, Web and CMS | No Comments »

Monitoring MySQL server queries and debunning performance (slow query) issues with native MySQL commands and with mtop, mytop

Thursday, May 10th, 2012

If you're a Linux server administrator running MySQL server, you need to troubleshoot performance and bottleneck issues with the SQL database every now and then. In this article, I will pinpoint few methods to debug basic issues with MySQL database servers.

1. Troubleshooting MySQL database queries with native SQL commands

a)One way to debug errors and get general statistics is by logging in with mysql cli and check the mysql server status:

# mysql -u root -p
mysql> SHOW STATUS;
+-----------------------------------+------------+
| Variable_name | Value |
+-----------------------------------+------------+
| Aborted_clients | 1132 |
| Aborted_connects | 58 |
| Binlog_cache_disk_use | 185 |
| Binlog_cache_use | 2542 |
| Bytes_received | 115 |
.....
.....
| Com_xa_start | 0 |
| Compression | OFF |
| Connections | 150000 |
| Created_tmp_disk_tables | 0 |
| Created_tmp_files | 221 |
| Created_tmp_tables | 1 |
| Delayed_errors | 0 |
| Delayed_insert_threads | 0 |
| Delayed_writes | 0 |
| Flush_commands | 1 |
.....
.....
| Handler_write | 132 |
| Innodb_page_size | 16384 |
| Innodb_pages_created | 6204 |
| Innodb_pages_read | 8859 |
| Innodb_pages_written | 21931 |
.....
.....
| Slave_running | OFF |
| Slow_launch_threads | 0 |
| Slow_queries | 0 |
| Sort_merge_passes | 0 |
| Sort_range | 0 |
| Sort_rows | 0 |
| Sort_scan | 0 |
| Table_locks_immediate | 4065218 |
| Table_locks_waited | 196 |
| Tc_log_max_pages_used | 0 |
| Tc_log_page_size | 0 |
| Tc_log_page_waits | 0 |
| Threads_cached | 51 |
| Threads_connected | 1 |
| Threads_created | 52 |
| Threads_running | 1 |
| Uptime | 334856 |
+-----------------------------------+------------+
225 rows in set (0.00 sec)

SHOW STATUS; command gives plenty of useful info, however it is not showing the exact list of queries currently processed by the SQL server. Therefore sometimes it is exactly a stucked (slow queries) execution, you need to debug in order to fix a lagging SQL. One way to track this slow queries is via enabling mysql slow-query.log. Anyways enabling the slow-query requires a MySQL server restart and some critical productive database servers are not so easy to restart and the SQL slow queries have to be tracked "on the fly" so to say.
Therefore, to check the exact (slow) queries processed by the SQL server (without restarting it), do
 

mysql> SHOW processlist;
+——+——+—————+——+———+——+————–+——————————————————————————————————+
| Id | User | Host | db | Command | Time | State | Info |
+——+——+—————+——+———+——+————–+——————————————————————————————————+
| 609 | root | localhost | blog | Sleep | 5 | | NULL |
| 1258 | root | localhost | NULL | Sleep | 85 | | NULL |
| 1308 | root | localhost | NULL | Query | 0 | NULL | show processlist |
| 1310 | blog | pcfreak:64033 | blog | Query | 0 | Sending data | SELECT comment_author, comment_author_url, comment_content, comment_post_ID, comment_ID, comment_aut |
+——+——+—————+——+———+——+————–+——————————————————————————————————+
4 rows in set (0.00 sec)
mysql>

SHOW processlist gives a good view on what is happening inside the SQL.

To get more complete information on SQL query threads use the full extra option:

mysql> SHOW full processlist;

This gives pretty full info on running threads, but unfortunately it is annoying to re-run the command again and again – constantly to press UP Arrow + Enter keys.

Hence it is useful to get the same command output, refresh periodically every few seconds. This is possible by running it through the watch command:

debian:~# watch "'show processlist' | mysql -u root -p'secret_password'"

watch will run SHOW processlist every 2 secs (this is default watch refresh time, for other timing use watch -n 1, watch -n 10 etc. etc.

The produced output will be similar to:

Every 2.0s: echo 'show processlist' | mysql -u root -p'secret_password' Thu May 10 17:24:19 2012

Id User Host db Command Time State Info
609 root localhost blog Sleep 3 NULL1258 root localhost NULL Sleep 649 NULL1542 blog pcfreak:64981 blog Query 0 Copying to tmp table \
SELECT p.ID, p.post_title, p.post_content,p.post_excerpt, p.pos
t_date, p.comment_count, count(t_r.o
1543 root localhost NULL Query 0 NULL show processlist

Though this "hack" is one of the possible ways to get some interactivity on what is happening inside SQL server databases and tables table. for administering hundred or thousand SQL servers running dozens of queries per second – monitor their behaviour few times aday using mytop or mtop is times easier.

Though, the names of the two tools are quite similar and I used to think both tools are one and the same, actually they're not but both are suitable for monitoring sql database execution in real time.

As a sys admin, I've used mytop and mtop, on almost each Linux server with MySQL server installed.
Both tools has helped me many times in debugging oddities with sql servers. Therefore my personal view is mytop and mtop should be along with the Linux sysadmin most useful command tools outfit, still I'm sure many administrators still haven't heard about this nice goodies.

1. Installing mytop on Debian, Ubuntu and other deb based GNU / Linux-es

mytop is available for easy install on Debian and across all debian / ubuntu and deb derivative distributions via apt.

Here is info obtained with apt-cache show

debian:~# apt-cache show mytop|grep -i description -A 3
Description: top like query monitor for MySQL
Mytop is a console-based tool for monitoring queries and the performance
of MySQL. It supports version 3.22.x, 3.23.x, 4.x and 5.x servers.
It's written in Perl and support connections using TCP/IP and UNIX sockets.

Installing the tool is done with the trivial:

debian:~# apt-get --yes install mytop
....

mtop used to be available for apt-get-ting in Debian Lenny and prior Debian releases but in Squeeze onwards, only mytop is included (probably due to some licensing incompitabilities with mtop??).

For those curious on how mtop / mytop works – both are perl scripts written to periodically connects to the SQL server and run commands similar to SHOW FULL PROCESSLIST;. Then, the output is parsed and displayed to the user.

Here how mytop running, looks like:

MyTOP showing queries running on Ubuntu 8.04 Linux - Debugging interactively top like MySQL

2. Installing mytop on RHEL and CentOS

By default in RHEL and CentOS and probably other RedHat based Linux-es, there is neither mtop nor mytop available in package repositories. Hence installing the tools on those is only available from 3rd parties. As of time of writting an rpm builds for RHEL and CentOS, as well as (universal rpm distros) src.rpm package is available on http://pkgs.repoforge.org/mytop/. For the sake of preservation – if in future those RPMs disappear, I made a mirror of mytop rpm's here

Mytop rpm builds depend on a package perl(Term::ReadKey), my attempt to install it on CentOS 5.6, returned following err:

[root@cenots ~]# rpm -ivh mytop-1.4-2.el5.rf.noarch.rpm
warning: mytop-1.4-2.el5.rf.noarch.rpm: Header V3 DSA signature: NOKEY, key ID 6b8d79e6
error: Failed dependencies:
perl(Term::ReadKey) is needed by mytop-1.4-2.el5.rf.noarch

The perl(Term::ReadKey package is not available in CentOS 5.6 and (probably other centos releases default repositories so I had to google perl(Term::ReadKey) I found it on http://rpm.pbone.net/ package repository, the exact url to the rpm dependency as of time of writting this post is:

ftp://ftp.pbone.net/mirror/yum.trixbox.org/centos/5/old/perl-Term-ReadKey-2.30-2.rf.i386.rpm

Quickest, way to install it is:

[root@centos ~]# rpm -ivh ftp://ftp.pbone.net/mirror/yum.trixbox.org/centos/5/old/perl-Term-ReadKey-2.30-2.rf.i386.rpmRetrieving ftp://ftp.pbone.net/mirror/yum.trixbox.org/centos/5/old/perl-Term-ReadKey-2.30-2.rf.i386.rpmPreparing... ########################################### [100%]
1:perl-Term-ReadKey ########################################### [100%]

This time mytop, install went fine:

[root@centos ~]# rpm -ivh mytop-1.4-2.el5.rf.noarch.rpm
warning: mytop-1.4-2.el5.rf.noarch.rpm: Header V3 DSA signature: NOKEY, key ID 6b8d79e6
Preparing... ########################################### [100%]
1:mytop ########################################### [100%]

To use it further, it is the usual syntax:

mytop -u username -p 'secret_password' -d database

CentOS Linux MyTOP MySQL query benchmark screenshot - vpopmail query

3. Installing mytop and mtop on FreeBSD and other BSDs

To debug the running SQL queries in a MySQL server running on FreeBSD, one could use both mytop and mtop – both are installable via ports:

a) To install mtop exec:

freebsd# cd /usr/ports/sysutils/mtop
freebsd# make install clean
....

b) To install mytop exec:

freebsd# cd /usr/ports/databases/mytop
freebsd# make install clean
....

I personally prefer to use mtop on FreeBSD, because once run it runs prompts the user to interactively type in the user/pass

freebsd# mtop

Then mtop prompts the user with "interactive" dialog screen to type in user and pass:

Mtop interactive type in username and password screenshot on FreeBSD 7.2

It is pretty annoying, same mtop like syntax don't show user/pass prompt:

freebsd# mytop
Cannot connect to MySQL server. Please check the:

* database you specified "test" (default is "test")
* username you specified "root" (default is "root")
* password you specified "" (default is "")
* hostname you specified "localhost" (default is "localhost")
* port you specified "3306" (default is 3306)
* socket you specified "" (default is "")
The options my be specified on the command-line or in a ~/.mytop
config file. See the manual (perldoc mytop) for details.
Here's the exact error from DBI. It might help you debug:
Unknown database 'test'

The correct syntax to run mytop instead is:

freebsd# mytop -u root -p 'secret_password' -d 'blog'

Or the longer more descriptive:

freebsd# mytop --user root --pass 'secret_password' --database 'blog'

By the way if you take a look at mytop's manual you will notice a tiny error in documentation, where the three options –user, –pass and –database are wrongly said to be used as -user, -pass, -database:

freebsd# mytop -user root -pass 'secret_password' -database 'blog'
Cannot connect to MySQL server. Please check the:

* database you specified "atabase" (default is "test")
* username you specified "ser" (default is "root")
* password you specified "ass" (default is "")
* hostname you specified "localhost" (default is "localhost")
* port you specified "3306" (default is 3306)
* socket you specified "" (default is "")a
...
Access denied for user 'ser'@'localhost' (using password: YES)

Actually it is interesting mytop, precededed historically mtop.
mtop was later written (probably based on mytop), to run on FreeBSD OS by a famous MySQL (IT) spec — Jeremy Zawodny .
Anyone who has to do frequent MySQL administration tasks, should already heard Zawodny's name.
For those who haven't, Jeremy used to be a head database administrators and developer in Yahoo! Inc. some few years ago.
His website contains plenty of interesting thoughts and writtings on MySQL server and database management
 

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Posted in FreeBSD, Linux, Monitoring, MySQL, System Administration, Web and CMS | 1 Comment »

screen -d Fix “Must run suid root for multiuser support.” su user detach error

Thursday, March 28th, 2013

I had to run a shell script to run automatically in detached screen during Linux system boot up via /etc/rc.local. This is needed because the server uses the tiny shell script to fetch data from remote host database and fill information into local MySQL server.

My idea was to su from root to www-data (Apache) user – the script has requirements to run with Apache user, then it has to run detached using GNU screen (multi terminal emulator. The tiny one line script I imagined would do the trick is like so:

# tty=$(tty); su www-data -c 'cd /home/user/www/enetpulse; screen -d /home/user/www/enetpulse/while_true.sh'; chmod 0720 $tty
I run this as root user to test whether it will work or not before I put it in /etc/rc.local but for my surprise got an error:
 

Must run suid root for multiuser support.

After a quick investigation on what is causing it I came across the solution which is to include screen arguments (-m -S shared). The working variant that gets around the error – i.e. successfully changes user privileges to Debian Apache user (www-data) and then detach with screen is:

# tty=$(tty); chmod a+rw $tty; su www-data -c 'cd /home/user/www/enetpulse; screen -d -m -S shared /home/user/www/enetpulse/while_true.sh'; chmod 0720 $tty;
That's all now script works out as planned on next server reboot

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Posted in System Administration | No Comments »

How to fix problems with encoding not showing umlauts in after import of sql data to MySQL

Thursday, October 1st, 2009

I’m restoring some websites from backups this days. One of the swiss websites had a serious problem with umlauts not showing up.
This happened right after I’ve used an old dump from a MySQL Server running version 4.x, the imported data was to MySQL server version 5. The problem consisted in that everywhere an umault was placed the shown content was ü.

You can imagine how annoying and ugly that looked, the whole text was crappy.
After some googling with a help of one of my colleagues (a programmer). I was pointed to this nice article Mysql Latin1 Utf8 Conversion .
What happens is that for some reason the dump I’ve made had latin1 character-set even though the data inside was in utf8.
Thus importing the dump would try to import the data as latin1 and make a crap out of it. The fix is as simple as substituting latin8 to utf8 in your mysql dump file and then reimporting it again.
In my case the browser displayed by default the website characters in iso8859 instead of utf8, so I had to specificly to change the browser encoding to UTF8 to realize all is okay.
Then it was necessery to modify all the templates to use UTF8 instead of the wrong character encoding. I have no clue how does it happened that the same umlaut encoding on the old server, what I suspect is there was something with the Apache’s default character encoding probably I have it set there by default set to utf8.
Well so far so good, let’s see how much trashy stuff I have to deal with today.
END—–

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Posted in MySQL, System Administration | No Comments »

Optimize, check and repair tables in MySQL, howto improve work with tables in MySQL

Monday, April 12th, 2010

There are few quick tips that helps if some unexpected downtime of your SQL server occurs. Even though nowdays this won’t happen too often with servers running with a good ups, sometimes even administrator errors can cause problems with your mysql tables. If your MySQL server refuses to start, it’s quite probable that you’re experiencing a problem with a broken table or tables in MySQL. Therefore you need to go through all your mysql databases and check the consistency of your MyISAM or Innodb tables, ofcourse accordingly to your MySQL database types. To check a certain table for consistency with MySQL after you select the database, you have to execute: mysql$ CHECK TABLE your_table_name; If the above command after presumably executed with all your databases and there consequent tables reports, everytime OK then your MySQL crashes are not caused by table incosistencies. However if instead of OK the CHECK TABLE reports Corruptthen you have a broken table and you have to fix it as soon as possible, in order to be able to bring up to life the MySQL server once again. Here is an example of a broken table after a CHECK REPAIR searchindex; : +------------------+-------+----------+------------------------------------+ | Table | Op | Msg_type | Msg_text | +------------------+-------+----------+------------------------------------+ | test.searchindex | check | error | Key in wrong position at page 4096 | | test.searchindex | check | error | Corrupt | +------------------+-------+----------+------------------------------------+ To fix the CORRUPTED or BROKEN table as also known you have to issue the command: mysql$ REPAIR TABLE yourtable_name; Depending on your table size after a while, if everything is going fine you should see something like: +------------------+--------+----------+----------+ | Table | Op | Msg_type | Msg_text | +------------------+--------+----------+----------+ | test.searchindex | repair | status | OK | +------------------+--------+----------+----------+ 1 row in set (0.08 sec) Be aware that sometimes in order to fix a broken table you have to use the MySQL repair extended function. Expect The EXTENDED REPAIR function option to take a much more time, even sometimes with large databases with million of records it could take hours, especially if the MySQL server is serving other client requests as well. This terrible siutation sometimes occurs because of mysql locks, though I believe locks are probably a topic of another post. Hopefully after issuing that the table in MySQL would properly repair and your MySQL will begin starting up with the rc script once again. Apart from crashes and table repairs there are few nice things concerning MySQL that are doing me good every now and then. I’m talking about the MySQL functions: ANALYZE TABLE and OPTIMIZE TABLE ANALYZE TABLE does synchronization of the information concerning the variables within tables that has a INDEX key settled according to the database to which they belong. In other simply words, executing ANALYZE TABLE to your database tables every now and then and that would probably help in speeding up the code executed in the SQL that has JOINS involved. The second one OPTIMIZE TABLE is natively supported with MyISAM SQL database types, and secondary supported with Innodb, where the Optimize with Innodb is done in a non-traditional way. When invoked to process an Innodb table OPTIMIZE TABLE does use ALTER TABLE to achieve an Innodb table optimization. In practice what the optimize table does is defragmentation of the table unto which it’s executed. A quick example of the optimize table is for instance: OPTIMIZE TABLE your_table_name; In order to find out which tables need to be defragmented or in other words needs optimize table you have to issue the cmd: show table status where Data_free!=0; Note that you have to issue this command on each of your databases; Just because this is so boring you can of course use my script check_optimize_sql.sh which will quickly loop through all the databases and show you which tables need to be optimized. I’ve written also a second shell script that loops through all MySQL databases and lists all databases and sub tables that requires optimize and further on proceeds optimizing to download the script check_and_optimize_sql_tables.sh click here Happy optimizing 🙂

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Posted in MySQL, System Administration | 3 Comments »

How to revoke user global privileges in MySQL

Saturday, August 14th, 2010

I’ve recently realized one of the users I have added to one of the MySQL servers I do managehas actually some included a list of some of the global privileges.
This extra privileges the user had was actually something that was to be removed since theuser is not supposed to be able to list all existent databases on the MySQL server and things alike:

You can see below the excact SQL queries I had to issue to revoke the granted global privileges for the username.
Note to change the username before you execute the below queries:

REVOKE ALL PRIVILEGES ON * . * FROM 'username'@'localhost';
REVOKE GRANT OPTION ON * . * FROM 'username'@'localhost';
GRANT USAGE ON * . * TO 'username'@'localhost' WITH MAX_QUERIES_PER_HOUR 0 MAX_CONNECTIONS_PER_HOUR 0 MAX_UPDATES_PER_HOUR 0 MAX_USER_CONNECTIO
 

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Posted in Linux, MySQL, System Administration | No Comments »

How to list and exclude table names from a database in MySQL (exclude table names from an show tables in MySQL) by using information_schema

Wednesday, March 30th, 2011

Listing all table names from a MySQL database is a very easy and trivial task that every sql or system administrator out there is aware of.

However excluding certain table names from a whole list of tables belonging to a database is not that commonly used and therefore I believe many people have no clue how to do it when they have to.

Today for one of my sql backup scripts it was necessary that certain tables from a database to be excluded from the whole list of tables for a database I’m backupping.
My example database has the sample name exampledatabase and usually I do list all the table contents from that database with the well known command:

mysql> SHOW tables from exampledatabase;

However as my desire was to exclude certain tables from the list (preferrably with a certain SQL query) I had to ask around in irc.freenode.net for some hints on a ways to achieve my exclude table goals.

I was adviced by some people in #mysql that what I need to achieve my goal is the information_schema mysql structure, which is available since MySQL version 5.0.

After a bit of look around in the information_schema and the respective documentation on mysql.com, thanksfully I could comprehend the idea behind the information_schema, though to be honest the first time I saw the documentation it was completly foggy on how to use this information_schema;
It seems using the information_schema is very easy and is not much different from your normal queries syntax used to do trivial operations in the mysql server.

If you wonder just like I did what is mysql’s information_schema go and use the information_schema database (which I believe is a virtual database that is stored in the system memory).

For instance:

mysql> use information_schema;
Database changed
mysql> show tables
+---------------------------------------+
| Tables_in_information_schema |
+---------------------------------------+
| CHARACTER_SETS |
| COLLATIONS |
| COLLATION_CHARACTER_SET_APPLICABILITY |
| COLUMNS |
| COLUMN_PRIVILEGES |
| KEY_COLUMN_USAGE |
| PROFILING |
| ROUTINES |
| SCHEMATA |
| SCHEMA_PRIVILEGES |
| STATISTICS |
| TABLES |
| TABLE_CONSTRAINTS |
| TABLE_PRIVILEGES |
| TRIGGERS |
| USER_PRIVILEGES |
| VIEWS |
+---------------------------------------+
17 rows in set (0.00 sec)

To get a general view on what each of the tables in the information_schema database contains I used the normal SELECT command for example

mysql> select * from TABLES limit 10;

I used the limit clause in order to prevent being overfilled with data, where I could still see the table fields name to get general and few lines of the table to get an idea what kind of information the TABLES table contains.

If you haven’t got any ecperience with using the information_schema I would advice you do follow my example select and look around through all the listed tables in the information_schema database

That will also give you a few hints about the exact way the MySQL works and comprehends it’s contained data structures.

In short information_schema virtual database and it’s existing tables provides a very thorough information and if you’re an SQL admin you certainly want to look over it every now and then.

A bit of playing with it lead me to a command which is actually a good substitute for the normal SHOW TABLES; mysql command.
To achieve a SHOW TABLES from exampledatabase via the information_schema info structure you can for example issue:

select TABLE_NAME from TABLES where TABLE_SCHEMA='exampledatabase';

Now as I’ve said a few words about information_schema let me go back to the main topic of this small article, which is How to exclude table names from a SHOW tables list

Here is how exclude a number of tables from a complete list of tables belonging to a database:

select TABLE_NAME from TABLES where TABLE_SCHEMA='exampledatabase'
AND TABLE_NAME not in
('mysql_table1_to_exlude_from_list', 'mysql_table2_to_exclude_from_list', 'table3_to_exclude');

In this example the above mysql command will list all the tables content belonging to exampledatabase and instruct the MySQL server not to list the table names with names mysql_table1_to_exlude_from_list, mysql_table2_to_exclude_from_list, table3_to_exclude

If you need to exclude more tables from your mysql table listing just add some more tables after the …’table3_to_exclude’, ‘new_table4_to_exclude’,’etc..’);

Of course this example can easily be adopted to a MySQL backup script which requires the exclusion of certain tables from a backed up database.

An example on how you can use the above table exclude command straight from the bash shell would be:

debian:~# echo "use information_schema; select TABLE_NAME from TABLES where
TABLE_SCHEMA='exampledatabase' AND TABLE_NAME not in
('mysql_table1_to_exlude_from_list', 'mysql_table2_to_exclude_from_list', 'table3_to_exclude',);"
| mysql -u root -p

Now this little bash one-liner can easily be customized to a backup script to create backups of a certain databases with a certain tables (e.g. with excluded number of tables) from the backup.

It’s seriously a pity that by default the mysqldump command does not have an option for a certain tables exclude while making a database dump.
I’ve saw the mysqldump exclude option, being suggested somewhere online as a future feature of mysqldump, I’ve also seen it being reported in the mysql.com’s bug database, I truly hope in the upcoming releases we will see the exclude option to appear as a possible mysqldump argument.
 

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Posted in Linux, MySQL, Programming, System Administration | 2 Comments »

WordPress blog MySQL data maintainance valuable plugin WP-OPTIMIZE

Tuesday, April 12th, 2011

The more my blog is growing the slower it becomes, this is a tendency I’ve noticed since a couple of weeks.

Very fortunately while reading some random articles online I’ve came across a super valuable wordpress plugin called WP-OPTIMIZE

I think it’s best if I present instead of taking the time to explain what the WP-optimize does for a wordpress powered blog:

WP-Optimize is a WordPress 2.9++ database cleanup and optimization tool. It doesn’t require PhpMyAdmin to optimize your database tables. It allows you to remove post revisions, comments in the spam queue, un-approved comments within few clicks.

Additionally you can rename any username to another username too.

For example: If you want to rename default ‘admin’ username to ‘someothername’; just put ‘admin’ (without quotes) to the Old username field and the new username to the New username field, then click “PROCESS”)

Now in short to rephrase above text, during MySQL database requests a lot of database starts needing the so called MySQL optimization , this operation becomes necessery especially for databases which are very actively used and is related to the basic design of the mysql server.

Very often many tables starts having a lot of garbage (repetitive) data and therefore read and writes from the SQL server gets slower and slower day by day.

Thus the MySQL server has it’s famous OPTIMIZE TABLE command which does wipe out all the garbage unnecessery data stored in a tables/s and hence seriously impacts the later read/write table operations.

Now to go back to wordpress the same optimization issues, very often are a cause for a performance bottleneck and some smart guy has came with the great idea to create a specific wordpress plugin to fix such an optimize table issues

The WP-Optimize plugin has 5 major options which somehow could have a positive impact on blog’s performance, these are:
 

  • Remove all Post revisions
  • Remove all auto draft posts
  • Clean marked Spam comments
  • lean Unapproved comments

  • Optimize database tables

Apart from the nice performance boost applicaiton the wp-optimize plugin has one super valuable function, it could change the default wordpress blog administrator user admin to some other desired username, for example rename the default blog administrator username “admin” user to “john”.

From a security perspective this is another must have feature in every wordpress blog as it can kill many of the possible brute force attacks with some web brute force softwares like Hydra

Installing and using wp-optimize is a real piece of cake, here is a very quick few command lines to install it:

host:~# cd /var/www/blog/wp-content/plugins/
host:/var/www/blog/wp-content/plugins:# wget https://www.pc-freak.net/files/wp-optimize.0.9.2.zip
host:/var/www/blog/wp-content/plugins:# unzip wp-optimize.0.9.2.zip
...

To launch WP-OPTIMIZE and fix many speed bottlenecks caused by unoptimized tables, or just hanging around in database old spam comments, go and login with your adminsitrator to wordpress.

In the left pane menu starting up with Dashboard somewhere near the end of the vertical menu you will notice a button reading WP-Optimize .
Click over the Wp-Optimize button and a screen like the one in below’s screenshot will appear in your browser screen:

wp optimize plugin database optimization options screen

I have personally decided to use just 2 of all the 5 available primary plugin options, I decided to select only:
 

  • Clean marked Spam comments
  • Optimize database tables

Scrolling below the PROCEED button I could also notice a number of tables which were missing optimization and hence required an optimize table to be executed on each one of them.
Further on I pressed the PROCESS button and after a couple of minutes (2, 3 minutes) of waiting the wp-optimize plugin was done it’s selected tasks:

In the screenshot below, you see all my blog tables which were optimized by the plugin:
WP-Optimize optimized blog tables screenshot

It’s interesting to say few words about the Remove All Posts revisions plugin option, as many might be wondering what this plugin option really means.

When writting posts, wordpress has an option to restore to a certain point of the write out and makes a sort of different versions in time of each of it’s written posts.

Therefore later restoration if something gots deleted by mistake is facilitated, this is actually the all meaning of Remove All Posts revisions

With time and the increase wp posts the amount of Posts Revisions is growing on and on and just taking space and possibly making the access to the database entries slower, thus it might be a good idea to also remove them as, it’s absolutely rare to use the wp post restoration function.
However I’ve personally decided to not wipe out the old posts revisions as someday i might need it and I’m a bit scared that it might cause me some database issues.

I’ll be glad if somebody has tried the Posts Revisions wp-Optimize funciton and is happy with the results.

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Posted in MySQL, Web and CMS, Wordpress | No Comments »

swap_pager_getswapspace: failed, MySQL troubles on FreeBSD 7.2 cause and solution

Tuesday, May 3rd, 2011

Every now and then my FreeBSD router dmesg ( /var/log/dmesg.today ) logs, gets filled with error messages like:

pid 86369 (httpd), uid 80, was killed: out of swap space
swap_pager_getswapspace(14): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(11): failed
swap_pager_getswapspace(12): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(14): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(8): failed

Using swapinfo during the swap_pager_getswapspace(16): failed messages were logged in, I figured out that definitely the swap memory over-use is the bottleneck for the troubles, to find this I used the command:

freebsd# swapinfo
Device 1K-blocks Used Avail Capacity Type
/dev/ad0s1b 49712 45920 3792 92% Interleaved

After some investigation, I’ve figured out that the MySQL server is causing the kernel exceeded swap troubles.

My current MySQL server version is installed from the ports tree, whether I’m using the bsd port /usr/ports/databases/mysql51-server/ and it appears to work just fine.

However I have noticed that the mysql-server is missing a my.cnf file!, which means the mysql server is running under a mode with some kind of default configurations.

Strangely in the system process list it appeared it is using a default my.cnf file located in /var/db/mysql/my.cnf

Below you see the paste from the ps command:

ps axuww freebsd# ps axuww | grep -i my.cnf | grep -v grep
mysql 7557 0.0 0.1 3464 1268 p1 I 12:03PM 0:00.01 /bin/sh /usr/local/bin/mysqld_safe --defaults-extra-file=/var/db/mysql/my.cnf --user=mysql --datadir=/var/db/mysql --pid-file=/var/db/mysql/pcfreak.pidmysql 7589 0.0 5.1 93284 52852 p1 I 12:03PM 0:59.01 /usr/local/libexec/mysqld --defaults-extra-file=/var/db/mysql/my.cnf --basedir=/usr/local --datadir=/var/db/mysql --user=mysql --pid-file=/var/db/mysql/pcfreak.pid --port=3306 --socket=/tmp/mysql.sock

Nevertheless it appeared the sql server is running the file /var/db/mysql/my.cnf conf was not existing! This was really weird for me as I’m used to have the default my.cnf from my previous experience with Linux servers!

Thus the next logical thing I did was to create my.cnf conf file in order to be able to have a proper limiting configuration for the sql server.

The FreeBSD my.cnf skele files are found in /usr/local/share/mysql/, here are the 4 files one can use as a starting basis for further configuration of the mysql-server.

freebsd# ls -al /usr/local/share/mysql/my-*.cnf
-r--r--r-- 1 root wheel 4948 Aug 12 2009 /usr/local/share/mysql/my-huge.cnf
-r--r--r-- 1 root wheel 20949 Aug 12 2009 /usr/local/share/mysql/my-innodb-heavy-4G.cnf
-r--r--r-- 1 root wheel 4924 Aug 12 2009 /usr/local/share/mysql/my-large.cnf
-r--r--r-- 1 root wheel 4931 Aug 12 2009 /usr/local/share/mysql/my-medium.cnf
-r--r--r-- 1 root wheel 2502 Aug 12 2009 /usr/local/share/mysql/my-small.cnf

I have chosen to use the my-medium.cnf as a skele to tune up, as my server is not high iron one e.g. the host I run the mysql is a (simple dual core 1.2Ghz system).

Further on I copied the /usr/local/share/mysql/my-medium.cnf to /var/db/mysql/my.cnf e.g.:

freebsd# cp -rpf /usr/local/share/mysql/my-medium.cnf /var/db/mysql/my.cnf

As a next step to properly tune up the default values of the newly copied my.cnf to my specific server I used the Tuning-Primer MySQL tuning script

Using tuning-primer.sh is really easy as all I did is download, launch it and follow the script suggestions to correct some of the values already in my.cnf

I have finally ended up with the following my.cnf after using tuning-primer.sh to optimize mysql server to work with my bsd host

Now I really hope the shitty swap_pager_getswapspace: failed errors would not haunt me once again by crashing my server and causing mem overheads.

Still I wonder why the port developer Alex Dupre – ale@FreeBSD.org choose not to provide the default mysql51-server conf with some kind of my.cnf file? I hope he had a good reason.

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Posted in FreeBSD, MySQL, System Administration | 2 Comments »

How to check and repair broken MySQL ISAM tables

Monday, July 11th, 2011

MySQL repair artistic picture

If you are stuffed with errors in /var/log/mysqld.log similar to:

110711 11:00:48 [ERROR] /usr/libexec/mysqld: Incorrect information in file: './anyboots_moncler_spaccio/zen_seo_cache.frm'
110711 11:00:48 [ERROR] /usr/libexec/mysqld: Incorrect information in file: './anyboots_moncler_spaccio/zen_sessions.frm'

This is a sure sign something terrible has happened with your mysql database tables that lead to corruption.
Having corrupt table in mysql installation can severely lead to data loss as well as significantly reduce the speed and performance of a MySQL server in this awful times mysqlcheck is the best friend of the administrator, here is how you can check and repair broken tables in MySQL server:

mysql-server:~# mysqlcheck --all-databases -u root -p
chillor_hjbgl.vn_users OK
chillor_lul.mybb_adminlog OK
chillor_lul.mybb_adminoptions OK
chillor_lul.mybb_adminsessions OK
chillor_lul.mybb_adminviews OK
chillor_lul.mybb_announcements OK
...

You will notice the corrupt sql tables will be reported as corrupt by the tool and mysqlcheck will try it’s best to recover the corrupt tables.

In most cases this should be enough to recover corrupt tables.

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Posted in Linux, MySQL, System Administration | No Comments »

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