Posts Tagged ‘mysqld’

How to solve “Incorrect key file for table ‘/tmp/#sql_9315.MYI’; try to repair it” mysql start up error

Saturday, April 28th, 2012

When a server hard disk scape gets filled its common that Apache returns empty (no content) pages…
This just happened in one server I administer. To restore the normal server operation I freed some space by deleting old obsolete backups.
Actually the whole reasons for this mess was an enormous backup files, which on the last monthly backup overfilled the disk empty space.

Though, I freed about 400GB of space on the the root filesystem and on a first glimpse the system had plenty of free hard drive space, still restarting the MySQL server refused to start up properly and spit error:

Incorrect key file for table '/tmp/#sql_9315.MYI'; try to repair it" mysql start up error

Besides that there have been corrupted (crashed) tables, which reported next to above error.
Checking in /tmp/#sql_9315.MYI, I couldn't see any MYI – (MyISAM) format file. A quick google look up revealed that this error is caused by not enough disk space. This was puzzling as I can see both /var and / partitions had plenty of space so this shouldn't be a problem. Also manally creating the file /tmp/#sql_9315.MYI with:

server:~# touch /tmp/#sql_9315.MYI

Didn't help it, though the file created fine. Anyways a bit of a closer examination I've noticed a /tmp filesystem mounted besides with the other file system mounts ????
You can guess my great amazement to find this 1 Megabyte only /tmp filesystem hanging on the server mounted on the server.

I didn't mounted this 1 Megabyte filesystem, so it was either an intruder or some kind of "weird" bug…
I digged in Googling to see, if I can find more on the error and found actually the whole mess with this 1 mb mounted /tmp partition is caused by, just recently introduced Debian init script /etc/init.d/mountoverflowtmp.
It seems this script was introduced in Debian newer releases. mountoverflowtmp is some kind of emergency script, which is triggered in case if the root filesystem/ space gets filled.
The script has only two options:

# /etc/init.d/mountoverflowtmp
Usage: mountoverflowtmp [start|stop]

Once started what it does it remounts the /tmp to be 1 megabyte in size and stops its execution like it never run. Well maybe, the developers had something in mind with introducing this script I will not argue. What I should complain though is the script design is completely broken. Once the script gets "activated" and does its job. This 1MB mount stays like this, even if hard disk space is freed on the root partition – / ….

Hence to cope with this unhandy situation, once I had freed disk space on the root partition for some reason mountoverflowtmp stop option was not working,
So I had to initiate "hard" unmount:

server:~# mount -l /tmp

Also as I had a bunch of crashed tables and to fix them, also issued on each of the broken tables reported on /etc/init.d/mysql start start-up.

server:~# mysql -u root -p
mysql> use Database_Name;
mysql> repair table Table_Name extended;
....

Then to finally solve the stupid Incorrect key file for table '/tmp/#sql_XXYYZZ33444.MYI'; try to repair it error, I had to restart once again the SQL server:

Stopping MySQL database server: mysqld.
Starting MySQL database server: mysqld.
Checking for corrupt, not cleanly closed and upgrade needing tables..
root@server:/etc/init.d#

Tadadadadam!, SQL now loads and works back as before!

How to fix “ERROR 1577 (HY000) at line 1: Cannot proceed because system tables used by Event Scheduler were found damaged at server start”

Saturday, May 12th, 2012

After migrating databases data from FreeBSD MySQL 5.0.83 server to a Debian Squeeze Linux MySQL version 5.1.61, below is a mysql –version issued on both the FreeBSD and the Debian servers

freebsd# mysql --version
mysql Ver 14.12 Distrib 5.0.83, for portbld-freebsd7.2 (i386) using 5.2

debian:~# mysql --version
mysql Ver 14.14 Distrib 5.1.61, for debian-linux-gnu (i486) using readline 6.1

The data SQL dump from the FreeBSD server was dumped with following command arguments:

freebsd# mysqldump --opt --allow-keywords --add-drop-table --all-databases -u root -p > complete_db_dump.sql

Then I used sftp to transfer complete_db_dump.sql dump to the a brand new installed latest Debian Squeeze 6.0.2. The Debian server was installed using a "clean Debian install" without graphical environment with CD downloaded from debian.org's site.

On the Debian machine I imported the dump with command:

debian:~# mysq -u root -p < complete_db_dump.sql

Right After the dump was imported I re-started SQL server which was previously installed with:

debian:~# apt-get install mysql-server
The error I got after restarting the mysql server:

debian:~# #/etc/init.d/mysql restart

was:

ERROR 1577 (HY000) at line 1: Cannot proceed because system tables used by Event Scheduler were found damaged at server start
ERROR 1547 (HY000) at line 1: Column count of mysql.proc is wrong. Expected 20, found 16. The table is probably corrupted

This error cost me a lot of nerves and searching in google to solve. It took me like half an hour of serious googling ,until I finally found the FIX!!!:

debian:~# mysql_upgrade -u root -h localhost -p --verbose --force
Enter password:
Looking for 'mysql' as: mysql
Looking for 'mysqlcheck' as: mysqlcheck
Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost'
Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost'
bible.holy_bible OK
bible.holybible OK
bible.quotes_meta OK

Afterwards finally I had to restart the mysql server once again in order to finally get rid of the shitty:

ERROR 1547 (HY000) at line 1: Column count of mysql.proc is wrong. Expected 20, found 16. The table is probably corrupted error!

debian:~# /etc/init.d/mysql restart
Stopping MySQL database server: mysqld.
Starting MySQL database server: mysqld.
Checking for corrupt, not cleanly closed and upgrade needing tables..

This solved the insane Column count of mysql.proc is wrong. Expected 20, found 16 once and for all!

Before I came with this fix I tried all kind of forum suggested fixes like:

debian:~# mysql_upgrade -u root -p
Looking for 'mysql' as: mysql
Looking for 'mysqlcheck' as: mysqlcheck
This installation of MySQL is already upgraded to 5.1.61, use --force if you still need to run mysql_upgrade

debian:~# mysql_upgrade -p
Looking for 'mysql' as: mysql
Looking for 'mysqlcheck' as: mysqlcheck
This installation of MySQL is already upgraded to 5.1.61, use --force if you still need to run mysql_upgrade

And few more, none of them worked the only one that worked was:

debian:~# #mysql_upgrade -u root -h localhost -p --verbose --force

I have to say big thanks to Mats Lindth wonderful blog post which provided me with the solution.

It seems, since Oracle bought the Community edition of MySQL thinks with this database server are getting more and more messy and backwards incompatible day by day.
Lately, I'm experiencing too much hassles with MySQL version incompitabilities. Maybe I should think for migrating permanently to Postgre …

By the way the ERROR 1547 (HY000) at line 1: Column count of mysql.proc is wrong. is most probably caused of some kind of password hashing incompitability between the password hashing between the BSD and Debian SQL versions, as mysql -u root -p < dump.sql, does override default stored user passwords in the mysql database tables… Such password, hashing issues were common in prior MySQL 4 to MySQL 5 migrations I've done, however since MySQL 5+ is already storing its password strings encrypted with md5 encryption I wonder why on earth this mess happens ….