Posts Tagged ‘Fixing Checking’

Install and configure rkhunter for improved security on a PCI DSS Linux / BSD servers with no access to Internet

Wednesday, November 10th, 2021


rkhunter or Rootkit Hunter scans systems for known and unknown rootkits. The tool is not new and most system administrators that has to mantain some good security servers perhaps already use it in their daily sysadmin tasks.

It does this by comparing SHA-1 Hashes of important files with known good ones in online databases, searching for default directories (of rootkits), wrong permissions, hidden files, suspicious strings in kernel modules, commmon backdoors, sniffers and exploits as well as other special tests mostly for Linux and FreeBSD though a ports for other UNIX operating systems like Solaris etc. are perhaps available. rkhunter is notable due to its inclusion in popular mainstream FOSS operating systems (CentOS, Fedora,Debian, Ubuntu etc.).

Even though rkhunter is not rapidly improved over the last 3 years (its last Official version release was on 20th of Febuary 2018), it is a good tool that helps to strengthen even further security and it is often a requirement for Unix servers systems that should follow the PCI DSS Standards (Payment Card Industry Data Security Standards).

Configuring rkhunter is a pretty straight forward if you don't have too much requirements but I decided to write this article for the reason there are fwe interesting options that you might want to adopt in configuration to whitelist any files that are reported as Warnings, as well as how to set a configuration that sets a stricter security checks than the installation defaults. 

1. Install rkhunter .deb / .rpm package depending on the Linux distro or BSD

  • If you have to place it on a Redhat based distro CentOS / Redhat / Fedora

[root@Centos ~]# yum install -y rkhunter


  • On Debian distros the package name is equevallent to install there exec usual:

root@debian:~# apt install –yes rkhunter

  • On FreeBSD / NetBSD or other BSD forks you can install it from the BSD "World" ports system or install it from a precompiled binary.

freebsd# pkg install rkhunter

One important note to make here is to have a fully functional Alarming from rkhunter, you will have to have a fully functional configured postfix / exim / qmail whatever mail server to relay via official SMTP so you the Warning Alarm emails be able to reach your preferred Alarm email address. If you haven't installed postfix for example and configure it you might do.

– On Deb based distros 

[root@Centos ~]#yum install postfix

– On RPM based distros

root@debian:~# apt-get install –yes postfix

and as minimum, further on configure some functional Email Relay server within /etc/postfix/

# vi /etc/postfix/
relayhost = []

2. Prepare rkhunter.conf initial configuration

Depending on what kind of files are present on the filesystem it could be for some reasons some standard package binaries has to be excluded for verification, because they possess unusual permissions because of manual sys admin monification this is done with the rkhunter variable PKGMGR_NO_VRFY.

If remote logging is configured on the system via something like rsyslog you will want to specificly tell it to rkhunter so this check as a possible security issue is skipped via ALLOW_SYSLOG_REMOTE_LOGGING=1. 

In case if remote root login via SSH protocol is disabled via /etc/ssh/sshd_config
PermitRootLogin no variable, the variable to include is ALLOW_SSH_ROOT_USER=no

It is useful to also increase the hashing check algorithm for security default one SHA256 you might want to change to SHA512, this is done via rkhunter.conf var HASH_CMD=SHA512

Triggering new email Warnings has to be configured so you receive, new mails at a preconfigured mailbox of your choice via variable


# vi /etc/rkhunter.conf




# Needed for corosync/pacemaker since update 19.11.2020


# enabled ssh root access skip



# Email address to sent alert in case of Warnings


Optionally if you're using something specific such as corosync / pacemaker High Availability cluster or some specific software that is creating /dev/ files identified as potential Risks you might want to add more rkhunter.conf options like:

# Allow PCS/Pacemaker/Corosync
# Needed for corosync/pacemaker since update 19.11.2020

# tomboy creates this one
# created by libv4l
# created by spice video
# created by mdadm
# 389 Directory Server
# squid proxy
# squid ssl cache
# Allow podman


3. Set the proper mirror database URL location to internal network repository


Usually  file /var/lib/rkhunter/db/mirrors.dat does contain Internet server address where latest version of mirrors.dat could be fetched, below is how it looks by default on Debian 10 Linux.

root@debian:/var/lib/rkhunter/db# cat mirrors.dat 

As you can guess a machine that doesn't have access to the Internet neither directly, neither via some kind of secure proxy because it is in a Paranoic Demilitarized Zone (DMZ) Network with many firewalls. What you can do then is setup another Mirror server (Apache / Nginx) within the local PCI secured LAN that gets regularly the database from official database on (by installing and running rkhunter –update command on the Mirror WebServer and copying data under some directory structure on the remote local LAN accessible server, to keep the DB uptodate you might want to setup a cron to periodically copy latest available rkhunter database towards the http://mirror-url/path-folder/)

# vi /var/lib/rkhunter/db/mirrors.dat


A mirror copy of entire db files from Debian 10.8 ( Buster ) ready for download are here.

Update entire file property db and check for rkhunter db updates


# rkhunter –update && rkhunter –propupdate

[ Rootkit Hunter version 1.4.6 ]

Checking rkhunter data files…
  Checking file mirrors.dat                                  [ Skipped ]
  Checking file programs_bad.dat                             [ No update ]
  Checking file backdoorports.dat                            [ No update ]
  Checking file suspscan.dat                                 [ No update ]
  Checking file i18n/cn                                      [ No update ]
  Checking file i18n/de                                      [ No update ]
  Checking file i18n/en                                      [ No update ]
  Checking file i18n/tr                                      [ No update ]
  Checking file i18n/tr.utf8                                 [ No update ]
  Checking file i18n/zh                                      [ No update ]
  Checking file i18n/zh.utf8                                 [ No update ]
  Checking file i18n/ja                                      [ No update ]



4. Initiate a first time check and see whether something is not triggering Warnings

# rkhunter –check


As you might have to run the rkhunter multiple times, there is annoying Press Enter prompt, between checks. The idea of it is that you're able to inspect what went on but since usually, inspecting /var/log/rkhunter/rkhunter.log is much more easier, I prefer to skip this with –skip-keypress option.

# rkhunter –check  –skip-keypress

5. Whitelist additional files and dev triggering false warnings alerts

You have to keep in mind many files which are considered to not be officially PCI compatible and potentially dangerous such as lynx browser curl, telnet etc. might trigger Warning, after checking them thoroughfully with some AntiVirus software such as Clamav and checking the MD5 checksum compared to a clean installed .deb / .rpm package on another RootKit, Virus, Spyware etc. Clean system (be it virtual machine or a Testing / Staging) machine you might want to simply whitelist the files which are incorrectly detected as dangerous for the system security.

Again this can be achieved with


Some Cluster softwares that are preparing their own /dev/ temporary files such as Pacemaker / Corosync might also trigger alarms, so you might want to suppress this as well with ALLOWDEVFILE


If Warnings are found check what is the issue and if necessery white list files due to incorrect permissions in /etc/rkhunter.conf .


Re-run the check until all appears clean as in below screenshot.


Fixing Checking for a system logging configuration file [ Warning ]

If you happen to get some message like, message appears when rkhunter -C is done on legacy CentOS release 6.10 (Final) servers:

[13:45:29] Checking for a system logging configuration file [ Warning ]
[13:45:29] Warning: The 'systemd-journald' daemon is running, but no configuration file can be found.
[13:45:29] Checking if syslog remote logging is allowed [ Allowed ]

To fix it, you will have to disable SYSLOG_CONFIG_FILE at all.