Posts Tagged ‘half an hour’

How to fix “ERROR 1577 (HY000) at line 1: Cannot proceed because system tables used by Event Scheduler were found damaged at server start”

Saturday, May 12th, 2012

After migrating databases data from FreeBSD MySQL 5.0.83 server to a Debian Squeeze Linux MySQL version 5.1.61, below is a mysql –version issued on both the FreeBSD and the Debian servers

freebsd# mysql --version
mysql Ver 14.12 Distrib 5.0.83, for portbld-freebsd7.2 (i386) using 5.2

debian:~# mysql --version
mysql Ver 14.14 Distrib 5.1.61, for debian-linux-gnu (i486) using readline 6.1

The data SQL dump from the FreeBSD server was dumped with following command arguments:

freebsd# mysqldump --opt --allow-keywords --add-drop-table --all-databases -u root -p > complete_db_dump.sql

Then I used sftp to transfer complete_db_dump.sql dump to the a brand new installed latest Debian Squeeze 6.0.2. The Debian server was installed using a "clean Debian install" without graphical environment with CD downloaded from's site.

On the Debian machine I imported the dump with command:

debian:~# mysq -u root -p < complete_db_dump.sql

Right After the dump was imported I re-started SQL server which was previously installed with:

debian:~# apt-get install mysql-server
The error I got after restarting the mysql server:

debian:~# #/etc/init.d/mysql restart


ERROR 1577 (HY000) at line 1: Cannot proceed because system tables used by Event Scheduler were found damaged at server start
ERROR 1547 (HY000) at line 1: Column count of mysql.proc is wrong. Expected 20, found 16. The table is probably corrupted

This error cost me a lot of nerves and searching in google to solve. It took me like half an hour of serious googling ,until I finally found the FIX!!!:

debian:~# mysql_upgrade -u root -h localhost -p --verbose --force
Enter password:
Looking for 'mysql' as: mysql
Looking for 'mysqlcheck' as: mysqlcheck
Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost'
Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost'
bible.holy_bible OK
bible.holybible OK
bible.quotes_meta OK

Afterwards finally I had to restart the mysql server once again in order to finally get rid of the shitty:

ERROR 1547 (HY000) at line 1: Column count of mysql.proc is wrong. Expected 20, found 16. The table is probably corrupted error!

debian:~# /etc/init.d/mysql restart
Stopping MySQL database server: mysqld.
Starting MySQL database server: mysqld.
Checking for corrupt, not cleanly closed and upgrade needing tables..

This solved the insane Column count of mysql.proc is wrong. Expected 20, found 16 once and for all!

Before I came with this fix I tried all kind of forum suggested fixes like:

debian:~# mysql_upgrade -u root -p
Looking for 'mysql' as: mysql
Looking for 'mysqlcheck' as: mysqlcheck
This installation of MySQL is already upgraded to 5.1.61, use --force if you still need to run mysql_upgrade

debian:~# mysql_upgrade -p
Looking for 'mysql' as: mysql
Looking for 'mysqlcheck' as: mysqlcheck
This installation of MySQL is already upgraded to 5.1.61, use --force if you still need to run mysql_upgrade

And few more, none of them worked the only one that worked was:

debian:~# #mysql_upgrade -u root -h localhost -p --verbose --force

I have to say big thanks to Mats Lindth wonderful blog post which provided me with the solution.

It seems, since Oracle bought the Community edition of MySQL thinks with this database server are getting more and more messy and backwards incompatible day by day.
Lately, I'm experiencing too much hassles with MySQL version incompitabilities. Maybe I should think for migrating permanently to Postgre …

By the way the ERROR 1547 (HY000) at line 1: Column count of mysql.proc is wrong. is most probably caused of some kind of password hashing incompitability between the password hashing between the BSD and Debian SQL versions, as mysql -u root -p < dump.sql, does override default stored user passwords in the mysql database tables… Such password, hashing issues were common in prior MySQL 4 to MySQL 5 migrations I've done, however since MySQL 5+ is already storing its password strings encrypted with md5 encryption I wonder why on earth this mess happens ….

How to auto restart CentOS Linux server with software watchdog (softdog) to reduce server downtime

Wednesday, August 10th, 2011

How to auto restart centos with software watchdog daemon to mitigate server downtimes, watchdog linux artistic logo

I’m in charge of dozen of Linux servers these days and therefore am required to restart many of the servers with a support ticket (because many of the Data Centers where the servers are co-located does not have a web interface or IPKVM connected to the server for that purpose). Therefore the server restart requests in case of crash sometimes gets processed in few hours or in best case in at least half an hour.

I’m aware of the existence of Hardware Watchdog devices, which are capable to detect if a server is hanged and auto-restart it, however the servers I administrate does not have Hardware support for Watchdog timer.

Thanksfully there is a free software project called Watchdog which is easily configured and mitigates the terrible downtimes caused every now and then by a server crash and respective delays by tech support in Data Centers.

I’ve recently blogged on the topic of Debian Linux auto-restart in case of kernel panic , however now i had to conifgure watchdog on some dozen of CentOS Linux servers.

It appeared installation & configuration of Watchdog on CentOS is a piece of cake and comes to simply following few easy steps, which I’ll explain quickly in this post:

1. Install with yum watchdog to CentOS

[root@centos:/etc/init.d ]# yum install watchdog

2. Add to configuration a log file to log watchdog activities and location of the watchdog device

The quickest way to add this two is to use echo to append it in /etc/watchdog.conf:

[root@centos:/etc/init.d ]# echo 'file = /var/log/messages' >> /etc/watchdog.conf
echo 'watchdog-device = /dev/watchdog' >> /etc/watchdog.conf

3. Load the softdog kernel module to initialize the software watchdog via /dev/watchdog

[root@centos:/etc/init.d ]# /sbin/modprobe softdog

Initialization of softdog should be indicated by a line in dmesg kernel log like the one above:

[root@centos:/etc/init.d ]# dmesg |grep -i watchdog
Software Watchdog Timer: 0.07 initialized. soft_noboot=0 soft_margin=60 sec (nowayout= 0)

4. Include the softdog kernel module to load on CentOS boot up

This is necessery, because otherwise after reboot the softdog would not be auto initialized and without it being initialized, the watchdog daemon service could not function as it does automatically auto reboots the server if the /dev/watchdog disappears.

It’s better that the softdog module is not loaded via /etc/rc.local but the default CentOS methodology to load module from /etc/rc.module is used:

[root@centos:/etc/init.d ]# echo modprobe softdog >> /etc/rc.modules
[root@centos:/etc/init.d ]# chmod +x /etc/rc.modules

5. Start the watchdog daemon service

The succesful intialization of softdog in step 4, should have provided the system with /dev/watchdog, before proceeding with starting up the watchdog daemon it’s wise to first check if /dev/watchdog is existent on the system. Here is how:

[root@centos:/etc/init.d ]# ls -al /dev/watchdogcrw------- 1 root root 10, 130 Aug 10 14:03 /dev/watchdog

Being sure, that /dev/watchdog is there, I’ll start the watchdog service.

[root@centos:/etc/init.d ]# service watchdog restart

Very important note to make here is that you should never ever configure watchdog service to run on boot time with chkconfig. In other words the status from chkconfig for watchdog boot on all levels should be off like so:

[root@centos:/etc/init.d ]# chkconfig --list |grep -i watchdog
watchdog 0:off 1:off 2:off 3:off 4:off 5:off 6:off

Enabling the watchdog from the chkconfig will cause watchdog to automatically restart the system as it will probably start the watchdog daemon before the softdog module is initialized. As watchdog will be unable to read the /dev/watchdog it will though the system has hanged even though the system might be in a boot process. Therefore it will end up in an endless loops of reboots which can only be fixed in a linux single user mode!!! Once again BEWARE, never ever activate watchdog via chkconfig!

Next step to be absolutely sure that watchdog device is running it can be checked with normal ps command:

[root@centos:/etc/init.d ]# ps aux|grep -i watchdog
root@hosting1-fr [~]# ps axu|grep -i watch|grep -v greproot 18692 0.0 0.0 1816 1812 ? SNLs 14:03 0:00 /usr/sbin/watchdog
root 25225 0.0 0.0 0 0 ? ZN 17:25 0:00 [watchdog] <defunct>

You have probably noticed the defunct state of watchdog, consider that as absolutely normal, above output indicates that now watchdog is properly running on the host and waiting to auto reboot in case of sudden /dev/watchdog disappearance.

As a last step before, after being sure its initialized properly, it’s necessery to add watchdog to run on boot time via /etc/rc.local post init script, like so:

[root@centos:/etc/init.d ]# echo 'echo /sbin/service watchdog start' >> /etc/rc.local

Now enjoy, watchdog is up and running and will automatically restart the CentOS host 😉