Posts Tagged ‘MYI’

How to determine which processes make most writes on the hard drive in GNU / Linux using kernel variable

Thursday, November 13th, 2014

how-to-determine-which-processes-writes-most-to-hard-drive-Linux-Kernel
In Linux there are plenty of tools to measure input / ouput – read / write server bottlenecks. Just to mention a few such are, the native part of all Linux distributions IOSTAT – which is a great tool to measure hard disk bottlenecks. However as iostat requires certain sysadmin skills for novice sys-admins, there is also ofcourse more interactive tools such as DSTAT or even better GLANCE which monitors not only disk writes but memory use, CPU load and Network use.

This tools can help you measure which processes are writting most (a lot) to hard disk drive but there is another quick and efficient way to track disk i/o by directly using the Linux kernel this is done via kernel parameter :

/proc/sys/vm/block_dump

To enable block_dump kernel logging:

echo 1 > /proc/sys/vm/block_dump

To later track in real time output from kernel interactively on which running process calling the kernel is writing to server hard drive
 

tail -f /var/log/syslog

The output  looks like so:
 

Nov 13 12:25:51 pcfreak kernel: [1075037.701056] kjournald(297): WRITE block 482293496 on sda1
Nov 13 12:25:51 pcfreak kernel: [1075037.701059] kjournald(297): WRITE block 482293504 on sda1
Nov 13 12:25:51 pcfreak kernel: [1075037.701062] kjournald(297): WRITE block 482293512 on sda1
Nov 13 12:25:51 pcfreak kernel: [1075037.701066] kjournald(297): WRITE block 482293520 on sda1
Nov 13 12:25:51 pcfreak kernel: [1075037.701069] kjournald(297): WRITE block 482293528 on sda1
Nov 13 12:25:51 pcfreak kernel: [1075037.701072] kjournald(297): WRITE block 482293536 on sda1
Nov 13 12:25:51 pcfreak kernel: [1075037.702824] kjournald(297): WRITE block 482293544 on sda1
Nov 13 12:25:52 pcfreak kernel: [1075039.219288] apache2(3377): dirtied inode 3571740 (_index.html.old) on sda1
Nov 13 12:25:52 pcfreak kernel: [1075039.436133] mysqld(22945): dirtied inode 21546676 (#sql_c0a_0.MYI) on sda1
Nov 13 12:25:52 pcfreak kernel: [1075039.436826] mysqld(22945): dirtied inode 21546677 (#sql_c0a_0.MYD) on sda1
Nov 13 12:25:53 pcfreak kernel: [1075039.662832] mysqld(22945): dirtied inode 21546676 (#sql_c0a_0.MYI) on sda1
Nov 13 12:25:53 pcfreak kernel: [1075039.663297] mysqld(22945): dirtied inode 21546677 (#sql_c0a_0.MYD) on sda1
Nov 13 12:25:53 pcfreak kernel: [1075039.817120] apache2(3377): dirtied inode 3571754 (_index.html) on sda1
Nov 13 12:25:53 pcfreak kernel: [1075039.819968] apache2(3377): dirtied inode 3571740 (_index.html_gzip) on sda1
Nov 13 12:25:53 pcfreak kernel: [1075039.820016] apache2(3377): dirtied inode 3571730 (?) on sda1
Nov 13 12:25:53 pcfreak kernel: [1075040.491378] mysqld(22931): dirtied inode 21546676 (#sql_c0a_0.MYI) on sda1
Nov 13 12:25:53 pcfreak kernel: [1075040.492309] mysqld(22931): dirtied inode 21546677 (#sql_c0a_0.MYD) on sda1
Nov 13 12:25:54 pcfreak kernel: [1075041.551513] apache2(3377): dirtied inode 1474706 (_index.html_gzip.old) on sda1
Nov 13 12:25:54 pcfreak kernel: [1075041.551566] apache2(3377): dirtied inode 1474712 (_index.html.old) on sda1
Nov 13 12:25:55 pcfreak kernel: [1075041.769036] mysqld(22941): dirtied inode 21546676 (#sql_c0a_0.MYI) on sda1
Nov 13 12:25:55 pcfreak kernel: [1075041.769804] mysqld(22941): dirtied inode 21546677 (#sql_c0a_0.MYD) on sda1
Nov 13 12:25:55 pcfreak kernel: [1075041.985857] apache2(3282): dirtied inode 4063282 (data_9d97a7f62d54bc5fd791fba3245ba591-SMF-modSettings.php) on sda1
Nov 13 12:25:55 pcfreak kernel: [1075041.987460] apache2(3282): dirtied inode 29010186 (data_9d97a7f62d54bc5fd791fba3245ba591-SMF-permissions–1.php) on sda1
Nov 13 12:25:55 pcfreak kernel: [1075041.988357] flush-8:0(289): WRITE block 51350632 on sda1

Using the kernel method to see which processes are stoning your server is great way especially for servers without connectivity to the Internet where you have no possibility to install sysstat package (contaning iostat),  dstat or glance.
Thanks to Marto's blog for  this nice hack.

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Posted in System Administration, Various, Web and CMS | No Comments »

How to solve “Incorrect key file for table ‘/tmp/#sql_9315.MYI’; try to repair it” mysql start up error

Saturday, April 28th, 2012

When a server hard disk scape gets filled its common that Apache returns empty (no content) pages…
This just happened in one server I administer. To restore the normal server operation I freed some space by deleting old obsolete backups.
Actually the whole reasons for this mess was an enormous backup files, which on the last monthly backup overfilled the disk empty space.

Though, I freed about 400GB of space on the the root filesystem and on a first glimpse the system had plenty of free hard drive space, still restarting the MySQL server refused to start up properly and spit error:

Incorrect key file for table '/tmp/#sql_9315.MYI'; try to repair it" mysql start up error

Besides that there have been corrupted (crashed) tables, which reported next to above error.
Checking in /tmp/#sql_9315.MYI, I couldn't see any MYI – (MyISAM) format file. A quick google look up revealed that this error is caused by not enough disk space. This was puzzling as I can see both /var and / partitions had plenty of space so this shouldn't be a problem. Also manally creating the file /tmp/#sql_9315.MYI with:

server:~# touch /tmp/#sql_9315.MYI

Didn't help it, though the file created fine. Anyways a bit of a closer examination I've noticed a /tmp filesystem mounted besides with the other file system mounts ????
You can guess my great amazement to find this 1 Megabyte only /tmp filesystem hanging on the server mounted on the server.

I didn't mounted this 1 Megabyte filesystem, so it was either an intruder or some kind of "weird" bug…
I digged in Googling to see, if I can find more on the error and found actually the whole mess with this 1 mb mounted /tmp partition is caused by, just recently introduced Debian init script /etc/init.d/mountoverflowtmp.
It seems this script was introduced in Debian newer releases. mountoverflowtmp is some kind of emergency script, which is triggered in case if the root filesystem/ space gets filled.
The script has only two options:

# /etc/init.d/mountoverflowtmp
Usage: mountoverflowtmp [start|stop]

Once started what it does it remounts the /tmp to be 1 megabyte in size and stops its execution like it never run. Well maybe, the developers had something in mind with introducing this script I will not argue. What I should complain though is the script design is completely broken. Once the script gets "activated" and does its job. This 1MB mount stays like this, even if hard disk space is freed on the root partition – / ….

Hence to cope with this unhandy situation, once I had freed disk space on the root partition for some reason mountoverflowtmp stop option was not working,
So I had to initiate "hard" unmount:

server:~# mount -l /tmp

Also as I had a bunch of crashed tables and to fix them, also issued on each of the broken tables reported on /etc/init.d/mysql start start-up.

server:~# mysql -u root -p
mysql> use Database_Name;
mysql> repair table Table_Name extended;
....

Then to finally solve the stupid Incorrect key file for table '/tmp/#sql_XXYYZZ33444.MYI'; try to repair it error, I had to restart once again the SQL server:

Stopping MySQL database server: mysqld.
Starting MySQL database server: mysqld.
Checking for corrupt, not cleanly closed and upgrade needing tables..
root@server:/etc/init.d#

Tadadadadam!, SQL now loads and works back as before!

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Posted in MySQL, System Administration, Web and CMS | 2 Comments »