Archive for the ‘MySQL’ Category

Optimize, check and repair tables in MySQL, howto improve work with tables in MySQL

Monday, April 12th, 2010

There are few quick tips that helps if some unexpected downtime of your SQL server occurs. Even though nowdays this won’t happen too often with servers running with a good ups, sometimes even administrator errors can cause problems with your mysql tables. If your MySQL server refuses to start, it’s quite probable that you’re experiencing a problem with a broken table or tables in MySQL. Therefore you need to go through all your mysql databases and check the consistency of your MyISAM or Innodb tables, ofcourse accordingly to your MySQL database types. To check a certain table for consistency with MySQL after you select the database, you have to execute: mysql$ CHECK TABLE your_table_name; If the above command after presumably executed with all your databases and there consequent tables reports, everytime OK then your MySQL crashes are not caused by table incosistencies. However if instead of OK the CHECK TABLE reports Corruptthen you have a broken table and you have to fix it as soon as possible, in order to be able to bring up to life the MySQL server once again. Here is an example of a broken table after a CHECK REPAIR searchindex; : +------------------+-------+----------+------------------------------------+ | Table | Op | Msg_type | Msg_text | +------------------+-------+----------+------------------------------------+ | test.searchindex | check | error | Key in wrong position at page 4096 | | test.searchindex | check | error | Corrupt | +------------------+-------+----------+------------------------------------+ To fix the CORRUPTED or BROKEN table as also known you have to issue the command: mysql$ REPAIR TABLE yourtable_name; Depending on your table size after a while, if everything is going fine you should see something like: +------------------+--------+----------+----------+ | Table | Op | Msg_type | Msg_text | +------------------+--------+----------+----------+ | test.searchindex | repair | status | OK | +------------------+--------+----------+----------+ 1 row in set (0.08 sec) Be aware that sometimes in order to fix a broken table you have to use the MySQL repair extended function. Expect The EXTENDED REPAIR function option to take a much more time, even sometimes with large databases with million of records it could take hours, especially if the MySQL server is serving other client requests as well. This terrible siutation sometimes occurs because of mysql locks, though I believe locks are probably a topic of another post. Hopefully after issuing that the table in MySQL would properly repair and your MySQL will begin starting up with the rc script once again. Apart from crashes and table repairs there are few nice things concerning MySQL that are doing me good every now and then. I’m talking about the MySQL functions: ANALYZE TABLE and OPTIMIZE TABLE ANALYZE TABLE does synchronization of the information concerning the variables within tables that has a INDEX key settled according to the database to which they belong. In other simply words, executing ANALYZE TABLE to your database tables every now and then and that would probably help in speeding up the code executed in the SQL that has JOINS involved. The second one OPTIMIZE TABLE is natively supported with MyISAM SQL database types, and secondary supported with Innodb, where the Optimize with Innodb is done in a non-traditional way. When invoked to process an Innodb table OPTIMIZE TABLE does use ALTER TABLE to achieve an Innodb table optimization. In practice what the optimize table does is defragmentation of the table unto which it’s executed. A quick example of the optimize table is for instance: OPTIMIZE TABLE your_table_name; In order to find out which tables need to be defragmented or in other words needs optimize table you have to issue the cmd: show table status where Data_free!=0; Note that you have to issue this command on each of your databases; Just because this is so boring you can of course use my script check_optimize_sql.sh which will quickly loop through all the databases and show you which tables need to be optimized. I’ve written also a second shell script that loops through all MySQL databases and lists all databases and sub tables that requires optimize and further on proceeds optimizing to download the script check_and_optimize_sql_tables.sh click here Happy optimizing 🙂

How to dump table from a selected database in MySQL

Sunday, August 1st, 2010

I’ve recently had to dump a few tables from MySQL database to do so I used mysqldump,here is how:

/usr/bin/mysqldump database_name table_name -u root -p > table_name.sql

How to revoke user global privileges in MySQL

Saturday, August 14th, 2010

I’ve recently realized one of the users I have added to one of the MySQL servers I do managehas actually some included a list of some of the global privileges.
This extra privileges the user had was actually something that was to be removed since theuser is not supposed to be able to list all existent databases on the MySQL server and things alike:

You can see below the excact SQL queries I had to issue to revoke the granted global privileges for the username.
Note to change the username before you execute the below queries:

REVOKE ALL PRIVILEGES ON * . * FROM 'username'@'localhost';
REVOKE GRANT OPTION ON * . * FROM 'username'@'localhost';
GRANT USAGE ON * . * TO 'username'@'localhost' WITH MAX_QUERIES_PER_HOUR 0 MAX_CONNECTIONS_PER_HOUR 0 MAX_UPDATES_PER_HOUR 0 MAX_USER_CONNECTIO

 

How to set password on a mysql server with no password via mysql command line interface

Monday, March 28th, 2011

Many Linux distributions’s offered MySQL server comes without a set default password, in practice you can freely login to the mysql server on a plain mysql server installation on Debian, Ubuntu or Fedora by simply issuing:

linux:~# mysql -u root
Enter password:

Pressing enter will straight let you in the mysql server. The same kind of behaviour is also probably true on BSD based and many other Unixes which have pre-installed or the option to install a new mysql server.

I remember in my past that I’ve even seen a productive mysql servers on a servers running CMS based websites which doesn’t have a root password set.

Some administrators doesn’t take the time to think about the implications of the no password mysql installation and therefore being in a hurry simply let the server without an administrator password.
This is very common for the most lame and uneducated ones. Many novice system administrators think that by installing a phpmyadmin and configuring a password on it’s web interface is equal to setting up the mysql server (daemon) a password.

Thus for all this the uneducated ones and for all those who already have noticed that their newly installed mysql server doesn’t have a password set I’ve decided to give an example how a new mysql server password can be set or how an existing mysql server pass can be changed to a new one

To make any password manipulations usually the mysql-client package does provide a very handy instrument called mysqladmin , mysqladmin has many possibilities among which is creating a new mysql server admin (root) password or changing a previously set mysql server password to a new one

1. Here is how you can set a new MySQL server password:

mysqladmin -u root 'password' YOURasddsaPASSWORDjqweHERE

2. If you need to change an already existing mysql password you need to provide just one more argument to mysqladmin:

mysqladmin -u root 'password' YOURasdfdsaNEWasddsaPASSWORD_HERE -pEnter password:

Whether the Enter password: field appears you will be required to fill in the original mysql server root password after which the password will be changed to the above string passed in to the mysqladmin command line ‘YOURasdfdsaNEWasddsaPASSWORD_HERE’

That’s all now you have either set a new password for the mysql server or have already changed your previous one.

How to list and exclude table names from a database in MySQL (exclude table names from an show tables in MySQL) by using information_schema

Wednesday, March 30th, 2011

Listing all table names from a MySQL database is a very easy and trivial task that every sql or system administrator out there is aware of.

However excluding certain table names from a whole list of tables belonging to a database is not that commonly used and therefore I believe many people have no clue how to do it when they have to.

Today for one of my sql backup scripts it was necessary that certain tables from a database to be excluded from the whole list of tables for a database I’m backupping.
My example database has the sample name exampledatabase and usually I do list all the table contents from that database with the well known command:

mysql> SHOW tables from exampledatabase;

However as my desire was to exclude certain tables from the list (preferrably with a certain SQL query) I had to ask around in irc.freenode.net for some hints on a ways to achieve my exclude table goals.

I was adviced by some people in #mysql that what I need to achieve my goal is the information_schema mysql structure, which is available since MySQL version 5.0.

After a bit of look around in the information_schema and the respective documentation on mysql.com, thanksfully I could comprehend the idea behind the information_schema, though to be honest the first time I saw the documentation it was completly foggy on how to use this information_schema;
It seems using the information_schema is very easy and is not much different from your normal queries syntax used to do trivial operations in the mysql server.

If you wonder just like I did what is mysql’s information_schema go and use the information_schema database (which I believe is a virtual database that is stored in the system memory).

For instance:

mysql> use information_schema;
Database changed
mysql> show tables
+---------------------------------------+
| Tables_in_information_schema |
+---------------------------------------+
| CHARACTER_SETS |
| COLLATIONS |
| COLLATION_CHARACTER_SET_APPLICABILITY |
| COLUMNS |
| COLUMN_PRIVILEGES |
| KEY_COLUMN_USAGE |
| PROFILING |
| ROUTINES |
| SCHEMATA |
| SCHEMA_PRIVILEGES |
| STATISTICS |
| TABLES |
| TABLE_CONSTRAINTS |
| TABLE_PRIVILEGES |
| TRIGGERS |
| USER_PRIVILEGES |
| VIEWS |
+---------------------------------------+
17 rows in set (0.00 sec)

To get a general view on what each of the tables in the information_schema database contains I used the normal SELECT command for example

mysql> select * from TABLES limit 10;

I used the limit clause in order to prevent being overfilled with data, where I could still see the table fields name to get general and few lines of the table to get an idea what kind of information the TABLES table contains.

If you haven’t got any ecperience with using the information_schema I would advice you do follow my example select and look around through all the listed tables in the information_schema database

That will also give you a few hints about the exact way the MySQL works and comprehends it’s contained data structures.

In short information_schema virtual database and it’s existing tables provides a very thorough information and if you’re an SQL admin you certainly want to look over it every now and then.

A bit of playing with it lead me to a command which is actually a good substitute for the normal SHOW TABLES; mysql command.
To achieve a SHOW TABLES from exampledatabase via the information_schema info structure you can for example issue:

select TABLE_NAME from TABLES where TABLE_SCHEMA='exampledatabase';

Now as I’ve said a few words about information_schema let me go back to the main topic of this small article, which is How to exclude table names from a SHOW tables list

Here is how exclude a number of tables from a complete list of tables belonging to a database:

select TABLE_NAME from TABLES where TABLE_SCHEMA='exampledatabase'
AND TABLE_NAME not in
('mysql_table1_to_exlude_from_list', 'mysql_table2_to_exclude_from_list', 'table3_to_exclude');

In this example the above mysql command will list all the tables content belonging to exampledatabase and instruct the MySQL server not to list the table names with names mysql_table1_to_exlude_from_list, mysql_table2_to_exclude_from_list, table3_to_exclude

If you need to exclude more tables from your mysql table listing just add some more tables after the …’table3_to_exclude’, ‘new_table4_to_exclude’,’etc..’);

Of course this example can easily be adopted to a MySQL backup script which requires the exclusion of certain tables from a backed up database.

An example on how you can use the above table exclude command straight from the bash shell would be:

debian:~# echo "use information_schema; select TABLE_NAME from TABLES where
TABLE_SCHEMA='exampledatabase' AND TABLE_NAME not in
('mysql_table1_to_exlude_from_list', 'mysql_table2_to_exclude_from_list', 'table3_to_exclude',);"
| mysql -u root -p

Now this little bash one-liner can easily be customized to a backup script to create backups of a certain databases with a certain tables (e.g. with excluded number of tables) from the backup.

It’s seriously a pity that by default the mysqldump command does not have an option for a certain tables exclude while making a database dump.
I’ve saw the mysqldump exclude option, being suggested somewhere online as a future feature of mysqldump, I’ve also seen it being reported in the mysql.com’s bug database, I truly hope in the upcoming releases we will see the exclude option to appear as a possible mysqldump argument.
 

WordPress blog MySQL data maintainance valuable plugin WP-OPTIMIZE

Tuesday, April 12th, 2011

The more my blog is growing the slower it becomes, this is a tendency I’ve noticed since a couple of weeks.

Very fortunately while reading some random articles online I’ve came across a super valuable wordpress plugin called WP-OPTIMIZE

I think it’s best if I present instead of taking the time to explain what the WP-optimize does for a wordpress powered blog:

WP-Optimize is a WordPress 2.9++ database cleanup and optimization tool. It doesn’t require PhpMyAdmin to optimize your database tables. It allows you to remove post revisions, comments in the spam queue, un-approved comments within few clicks.

Additionally you can rename any username to another username too.

For example: If you want to rename default ‘admin’ username to ‘someothername’; just put ‘admin’ (without quotes) to the Old username field and the new username to the New username field, then click “PROCESS”)

Now in short to rephrase above text, during MySQL database requests a lot of database starts needing the so called MySQL optimization , this operation becomes necessery especially for databases which are very actively used and is related to the basic design of the mysql server.

Very often many tables starts having a lot of garbage (repetitive) data and therefore read and writes from the SQL server gets slower and slower day by day.

Thus the MySQL server has it’s famous OPTIMIZE TABLE command which does wipe out all the garbage unnecessery data stored in a tables/s and hence seriously impacts the later read/write table operations.

Now to go back to wordpress the same optimization issues, very often are a cause for a performance bottleneck and some smart guy has came with the great idea to create a specific wordpress plugin to fix such an optimize table issues

The WP-Optimize plugin has 5 major options which somehow could have a positive impact on blog’s performance, these are:
 

  • Remove all Post revisions
  • Remove all auto draft posts
  • Clean marked Spam comments
  • lean Unapproved comments
  • Optimize database tables

Apart from the nice performance boost applicaiton the wp-optimize plugin has one super valuable function, it could change the default wordpress blog administrator user admin to some other desired username, for example rename the default blog administrator username “admin” user to “john”.

From a security perspective this is another must have feature in every wordpress blog as it can kill many of the possible brute force attacks with some web brute force softwares like Hydra

Installing and using wp-optimize is a real piece of cake, here is a very quick few command lines to install it:

host:~# cd /var/www/blog/wp-content/plugins/
host:/var/www/blog/wp-content/plugins:# wget https://www.pc-freak.net/files/wp-optimize.0.9.2.zip
host:/var/www/blog/wp-content/plugins:# unzip wp-optimize.0.9.2.zip
...

To launch WP-OPTIMIZE and fix many speed bottlenecks caused by unoptimized tables, or just hanging around in database old spam comments, go and login with your adminsitrator to wordpress.

In the left pane menu starting up with Dashboard somewhere near the end of the vertical menu you will notice a button reading WP-Optimize .
Click over the Wp-Optimize button and a screen like the one in below’s screenshot will appear in your browser screen:

wp optimize plugin database optimization options screen

I have personally decided to use just 2 of all the 5 available primary plugin options, I decided to select only:
 

  • Clean marked Spam comments
  • Optimize database tables

Scrolling below the PROCEED button I could also notice a number of tables which were missing optimization and hence required an optimize table to be executed on each one of them.
Further on I pressed the PROCESS button and after a couple of minutes (2, 3 minutes) of waiting the wp-optimize plugin was done it’s selected tasks:

In the screenshot below, you see all my blog tables which were optimized by the plugin:
WP-Optimize optimized blog tables screenshot

It’s interesting to say few words about the Remove All Posts revisions plugin option, as many might be wondering what this plugin option really means.

When writting posts, wordpress has an option to restore to a certain point of the write out and makes a sort of different versions in time of each of it’s written posts.

Therefore later restoration if something gots deleted by mistake is facilitated, this is actually the all meaning of Remove All Posts revisions

With time and the increase wp posts the amount of Posts Revisions is growing on and on and just taking space and possibly making the access to the database entries slower, thus it might be a good idea to also remove them as, it’s absolutely rare to use the wp post restoration function.
However I’ve personally decided to not wipe out the old posts revisions as someday i might need it and I’m a bit scared that it might cause me some database issues.

I’ll be glad if somebody has tried the Posts Revisions wp-Optimize funciton and is happy with the results.

swap_pager_getswapspace: failed, MySQL troubles on FreeBSD 7.2 cause and solution

Tuesday, May 3rd, 2011

Every now and then my FreeBSD router dmesg ( /var/log/dmesg.today ) logs, gets filled with error messages like:

pid 86369 (httpd), uid 80, was killed: out of swap space
swap_pager_getswapspace(14): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(11): failed
swap_pager_getswapspace(12): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(14): failed
swap_pager_getswapspace(16): failed
swap_pager_getswapspace(8): failed

Using swapinfo during the swap_pager_getswapspace(16): failed messages were logged in, I figured out that definitely the swap memory over-use is the bottleneck for the troubles, to find this I used the command:

freebsd# swapinfo
Device 1K-blocks Used Avail Capacity Type
/dev/ad0s1b 49712 45920 3792 92% Interleaved

After some investigation, I’ve figured out that the MySQL server is causing the kernel exceeded swap troubles.

My current MySQL server version is installed from the ports tree, whether I’m using the bsd port /usr/ports/databases/mysql51-server/ and it appears to work just fine.

However I have noticed that the mysql-server is missing a my.cnf file!, which means the mysql server is running under a mode with some kind of default configurations.

Strangely in the system process list it appeared it is using a default my.cnf file located in /var/db/mysql/my.cnf

Below you see the paste from the ps command:

ps axuww freebsd# ps axuww | grep -i my.cnf | grep -v grep
mysql 7557 0.0 0.1 3464 1268 p1 I 12:03PM 0:00.01 /bin/sh /usr/local/bin/mysqld_safe --defaults-extra-file=/var/db/mysql/my.cnf --user=mysql --datadir=/var/db/mysql --pid-file=/var/db/mysql/pcfreak.pidmysql 7589 0.0 5.1 93284 52852 p1 I 12:03PM 0:59.01 /usr/local/libexec/mysqld --defaults-extra-file=/var/db/mysql/my.cnf --basedir=/usr/local --datadir=/var/db/mysql --user=mysql --pid-file=/var/db/mysql/pcfreak.pid --port=3306 --socket=/tmp/mysql.sock

Nevertheless it appeared the sql server is running the file /var/db/mysql/my.cnf conf was not existing! This was really weird for me as I’m used to have the default my.cnf from my previous experience with Linux servers!

Thus the next logical thing I did was to create my.cnf conf file in order to be able to have a proper limiting configuration for the sql server.

The FreeBSD my.cnf skele files are found in /usr/local/share/mysql/, here are the 4 files one can use as a starting basis for further configuration of the mysql-server.

freebsd# ls -al /usr/local/share/mysql/my-*.cnf
-r--r--r-- 1 root wheel 4948 Aug 12 2009 /usr/local/share/mysql/my-huge.cnf
-r--r--r-- 1 root wheel 20949 Aug 12 2009 /usr/local/share/mysql/my-innodb-heavy-4G.cnf
-r--r--r-- 1 root wheel 4924 Aug 12 2009 /usr/local/share/mysql/my-large.cnf
-r--r--r-- 1 root wheel 4931 Aug 12 2009 /usr/local/share/mysql/my-medium.cnf
-r--r--r-- 1 root wheel 2502 Aug 12 2009 /usr/local/share/mysql/my-small.cnf

I have chosen to use the my-medium.cnf as a skele to tune up, as my server is not high iron one e.g. the host I run the mysql is a (simple dual core 1.2Ghz system).

Further on I copied the /usr/local/share/mysql/my-medium.cnf to /var/db/mysql/my.cnf e.g.:

freebsd# cp -rpf /usr/local/share/mysql/my-medium.cnf /var/db/mysql/my.cnf

As a next step to properly tune up the default values of the newly copied my.cnf to my specific server I used the Tuning-Primer MySQL tuning script

Using tuning-primer.sh is really easy as all I did is download, launch it and follow the script suggestions to correct some of the values already in my.cnf

I have finally ended up with the following my.cnf after using tuning-primer.sh to optimize mysql server to work with my bsd host

Now I really hope the shitty swap_pager_getswapspace: failed errors would not haunt me once again by crashing my server and causing mem overheads.

Still I wonder why the port developer Alex Dupre – ale@FreeBSD.org choose not to provide the default mysql51-server conf with some kind of my.cnf file? I hope he had a good reason.

How to make a mysql root user to login interactive with mysql cli passwordless

Wednesday, June 29th, 2011

MySQL Logo Passwordless root login .my.cnf

I’m using access to the mysql servers via localhost with mysql cli on daily basis.
With time I’ve figured out that it’s pretty unahandy to always login with my root mysql password, I mean each time to enter it, e.g.:

root@mysql-server:~# mysql -u root
Enter password:
...

Thus to make my life a way easier I decided to store my mysql root password in order to allow my root admin user to be able to login to my mysql server without asking for password. This saves time and nerves, as I’m not supposed to look up for the password file I store my server mysql root pass.

To allow my mysql cli interface, to login passwordless to the SQL server I had to create the file /root/.my.cnf readable only for my root user and store my MySQL username and password there.

Here is a sample /root/.my.cnf file:

root@mysql-server:~# cat /root/.my.cnf
[client]
user="root"
pass="mysecretMySQLPasswordgoeshere"

Now next time I use the mysql console interface to access my mysql server I don’t have to supply the password, here is how easier is the mysql login afterwards:

root@mysql-server:~# mysql -u root
Welcome to the MySQL monitor. Commands end with ; or g.
Your MySQL connection id is 3520
Server version: 5.0.77 Source distribution

Type ‘help;’ or ‘h’ for help. Type ‘c’ to clear the buffer.

mysql>

The only downside of using .my.cnf to store permanently the mysql server root and password is from security standpoint.
If for instance somebody roots my servers, where I have stored my root user/pwds in .my.cnf , he will be able immediately to get access to the MySQL server.

Another possible security flaw with using the mysql passwordless login “trick” is if somebody forgets to set proper file permissions to, .my.cnf

Once again the file should possess the permissons of:

root@mysql-server:~# ls -al /root/.my.cnf
-rw------- 1 root root 90 Apr 2 00:05 /root/.my.cnf

Any other permissons might allow non-privileged users to read the file and gain unathorized admin access to the SQL server.
 

How to check and repair broken MySQL ISAM tables

Monday, July 11th, 2011

MySQL repair artistic picture

If you are stuffed with errors in /var/log/mysqld.log similar to:

110711 11:00:48 [ERROR] /usr/libexec/mysqld: Incorrect information in file: './anyboots_moncler_spaccio/zen_seo_cache.frm'
110711 11:00:48 [ERROR] /usr/libexec/mysqld: Incorrect information in file: './anyboots_moncler_spaccio/zen_sessions.frm'

This is a sure sign something terrible has happened with your mysql database tables that lead to corruption.
Having corrupt table in mysql installation can severely lead to data loss as well as significantly reduce the speed and performance of a MySQL server in this awful times mysqlcheck is the best friend of the administrator, here is how you can check and repair broken tables in MySQL server:

mysql-server:~# mysqlcheck --all-databases -u root -p
chillor_hjbgl.vn_users OK
chillor_lul.mybb_adminlog OK
chillor_lul.mybb_adminoptions OK
chillor_lul.mybb_adminsessions OK
chillor_lul.mybb_adminviews OK
chillor_lul.mybb_announcements OK
...

You will notice the corrupt sql tables will be reported as corrupt by the tool and mysqlcheck will try it’s best to recover the corrupt tables.

In most cases this should be enough to recover corrupt tables.