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Install and enable Sysstats IO / DIsk / CPU / Network monitoring console suite on Redhat 8.3, Few sar useful command examples

Tuesday, September 28th, 2021

linux-sysstat-monitoring-logo

 

Why to monitoring CPU, Memory, Hard Disk, Network usage etc. with sysstats tools?
 

Using system monitoring tools such as Zabbix, Nagios Monit is a good approach, however sometimes due to zabbix server interruptions you might not be able to track certain aspects of system performance on time. Thus it is always a good idea to 
Gain more insights on system peroformance from command line. Of course there is cmd tools such as iostat and top, free, vnstat that provides plenty of useful info on system performance issues or bottlenecks. However from my experience to have a better historical data that is systimized and all the time accessible from console it is a great thing to have sysstat package at place. Since many years mostly on every server I administer, I've been using sysstats to monitor what is going on servers over a short time frames and I'm quite happy with it. In current company we're using Redhats and CentOS-es and I had to install sysstats on Redhat 8.3. I've earlier done it multiple times on Debian / Ubuntu Linux and while I've faced on some .deb distributions complications of making sysstat collect statistics I've come with an article on Howto fix sysstat Cannot open /var/log/sysstat/sa no such file or directory” on Debian / Ubuntu Linux
 

Sysstat contains the following tools related to collecting I/O and CPU statistics:
iostat
Displays an overview of CPU utilization, along with I/O statistics for one or more disk drives.
mpstat
Displays more in-depth CPU statistics.
Sysstat also contains tools that collect system resource utilization data and create daily reports based on that data. These tools are:
sadc
Known as the system activity data collector, sadc collects system resource utilization information and writes it to a file.
sar
Producing reports from the files created by sadc, sar reports can be generated interactively or written to a file for more intensive analysis.

My experience with CentOS 7 and Fedora to install sysstat it was pretty straight forward, I just had to install it via yum install sysstat wait for some time and use sar (System Activity Reporter) tool to report collected system activity info stats over time.
Unfortunately it seems on RedHat 8.3 as well as on CentOS 8.XX instaling sysstats does not work out of the box.

To complete a successful installation of it on RHEL 8.3, I had to:

[root@server ~]# yum install -y sysstat


To make sysstat enabled on the system and make it run, I've enabled it in sysstat

[root@server ~]# systemctl enable sysstat


Running immediately sar command, I've faced the shitty error:


“Cannot open /var/log/sysstat/sa18:
No such file or directory. Please check if data collecting is enabled”
 

Once installed I've waited for about 5 minutes hoping, that somehow automatically sysstat would manage it but it didn't.

To solve it, I've had to create additionally file /etc/cron.d/sysstat (weirdly RPM's post install instructions does not tell it to automatically create it)

[root@server ~]# vim /etc/cron.d/sysstat

# run system activity accounting tool every 10 minutes
0 * * * * root /usr/lib64/sa/sa1 60 59 &
# generate a daily summary of process accounting at 23:53
53 23 * * * root /usr/lib64/sa/sa2 -A &

 

  • /usr/local/lib/sa1 is a shell script that we can use for scheduling cron which will create daily binary log file.
  • /usr/local/lib/sa2 is a shell script will change binary log file to human-readable form.

 

[root@server ~]# chmod 600 /etc/cron.d/sysstat

[root@server ~]# systemctl restart sysstat


In a while if sysstat is working correctly you should get produced its data history logs inside /var/log/sa

[root@server ~]# ls -al /var/log/sa 


Note that the standard sysstat history files on Debian and other modern .deb based distros such as Debian 10 (in  y.2021) is stored under /var/log/sysstat

Here is few useful uses of sysstat cmds


1. Check with sysstat machine history SWAP and RAM Memory use


To lets say check last 10 minutes SWAP memory use:

[hipo@server yum.repos.d] $ sar -W  |last -n 10
 

Linux 4.18.0-240.el8.x86_64 (server)       09/28/2021      _x86_64_        (8 CPU)

12:00:00 AM  pswpin/s pswpout/s
12:00:01 AM      0.00      0.00
12:01:01 AM      0.00      0.00
12:02:01 AM      0.00      0.00
12:03:01 AM      0.00      0.00
12:04:01 AM      0.00      0.00
12:05:01 AM      0.00      0.00
12:06:01 AM      0.00      0.00

[root@ccnrlb01 ~]# sar -r | tail -n 10
14:00:01        93008   1788832     95.06         0   1357700    725740      9.02    795168    683484        32
14:10:01        78756   1803084     95.81         0   1358780    725740      9.02    827660    652248        16
14:20:01        92844   1788996     95.07         0   1344332    725740      9.02    813912    651620        28
14:30:01        92408   1789432     95.09         0   1344612    725740      9.02    816392    649544        24
14:40:01        91740   1790100     95.12         0   1344876    725740      9.02    816948    649436        36
14:50:01        91688   1790152     95.13         0   1345144    725740      9.02    817136    649448        36
15:00:02        91544   1790296     95.14         0   1345448    725740      9.02    817472    649448        36
15:10:01        91108   1790732     95.16         0   1345724    725740      9.02    817732    649340        36
15:20:01        90844   1790996     95.17         0   1346000    725740      9.02    818016    649332        28
Average:        93473   1788367     95.03         0   1369583    725074      9.02    800965    671266        29

 

2. Check system load? Are my processes waiting too long to run on the CPU?

[root@server ~ ]# sar -q |head -n 10
Linux 4.18.0-240.el8.x86_64 (server)       09/28/2021      _x86_64_        (8 CPU)

12:00:00 AM   runq-sz  plist-sz   ldavg-1   ldavg-5  ldavg-15   blocked
12:00:01 AM         0       272      0.00      0.02      0.00         0
12:01:01 AM         1       271      0.00      0.02      0.00         0
12:02:01 AM         0       268      0.00      0.01      0.00         0
12:03:01 AM         0       268      0.00      0.00      0.00         0
12:04:01 AM         1       271      0.00      0.00      0.00         0
12:05:01 AM         1       271      0.00      0.00      0.00         0
12:06:01 AM         1       265      0.00      0.00      0.00         0


3. Show various CPU statistics per CPU use
 

On a multiprocessor, multi core server sometimes for scripting it is useful to fetch processor per use historic data, 
this can be attained with:

 

[hipo@server ~ ] $ mpstat -P ALL
Linux 4.18.0-240.el8.x86_64 (server)       09/28/2021      _x86_64_        (8 CPU)

06:08:38 PM  CPU    %usr   %nice    %sys %iowait    %irq   %soft  %steal  %guest  %gnice   %idle
06:08:38 PM  all    0.17    0.02    0.25    0.00    0.05    0.02    0.00    0.00    0.00   99.49
06:08:38 PM    0    0.22    0.02    0.28    0.00    0.06    0.03    0.00    0.00    0.00   99.39
06:08:38 PM    1    0.28    0.02    0.36    0.00    0.08    0.02    0.00    0.00    0.00   99.23
06:08:38 PM    2    0.27    0.02    0.31    0.00    0.06    0.01    0.00    0.00    0.00   99.33
06:08:38 PM    3    0.15    0.02    0.22    0.00    0.03    0.01    0.00    0.00    0.00   99.57
06:08:38 PM    4    0.13    0.02    0.20    0.01    0.03    0.01    0.00    0.00    0.00   99.60
06:08:38 PM    5    0.14    0.02    0.27    0.00    0.04    0.06    0.01    0.00    0.00   99.47
06:08:38 PM    6    0.10    0.02    0.17    0.00    0.04    0.02    0.00    0.00    0.00   99.65
06:08:38 PM    7    0.09    0.02    0.15    0.00    0.02    0.01    0.00    0.00    0.00   99.70


 

sar-sysstat-cpu-statistics-screenshot

Monitor processes and threads currently being managed by the Linux kernel.

[hipo@server ~ ] $ pidstat

pidstat-various-random-process-statistics

[hipo@server ~ ] $ pidstat -d 2


pidstat-show-processes-with-most-io-activities-linux-screenshot

This report tells us that there is few processes with heave I/O use Filesystem system journalling daemon jbd2, apache, mysqld and supervise, in 3rd column you see their respective PID IDs.

To show threads used inside a process (like if you press SHIFT + H) inside Linux top command:

[hipo@server ~ ] $ pidstat -t -p 10765 1 3

Linux 4.19.0-14-amd64 (server)     28.09.2021     _x86_64_    (10 CPU)

21:41:22      UID      TGID       TID    %usr %system  %guest   %wait    %CPU   CPU  Command
21:41:23      108     10765         –    1,98    0,99    0,00    0,00    2,97     1  mysqld
21:41:23      108         –     10765    0,00    0,00    0,00    0,00    0,00     1  |__mysqld
21:41:23      108         –     10768    0,00    0,00    0,00    0,00    0,00     0  |__mysqld
21:41:23      108         –     10771    0,00    0,00    0,00    0,00    0,00     5  |__mysqld
21:41:23      108         –     10784    0,00    0,00    0,00    0,00    0,00     7  |__mysqld
21:41:23      108         –     10785    0,00    0,00    0,00    0,00    0,00     6  |__mysqld
21:41:23      108         –     10786    0,00    0,00    0,00    0,00    0,00     2  |__mysqld
…

10765 – is the Process ID whose threads you would like to list

With pidstat, you can further monitor processes for memory leaks with:

[hipo@server ~ ] $ pidstat -r 2

 

4. Report paging statistics for some old period

 

[root@server ~ ]# sar -B -f /var/log/sa/sa27 |head -n 10
Linux 4.18.0-240.el8.x86_64 (server)       09/27/2021      _x86_64_        (8 CPU)

15:42:26     LINUX RESTART      (8 CPU)

15:55:30     LINUX RESTART      (8 CPU)

04:00:01 PM  pgpgin/s pgpgout/s   fault/s  majflt/s  pgfree/s pgscank/s pgscand/s pgsteal/s    %vmeff
04:01:01 PM      0.00     14.47    629.17      0.00    502.53      0.00      0.00      0.00      0.00
04:02:01 PM      0.00     13.07    553.75      0.00    419.98      0.00      0.00      0.00      0.00
04:03:01 PM      0.00     11.67    548.13      0.00    411.80      0.00      0.00      0.00      0.00

 

5.  Monitor Received RX and Transmitted TX network traffic perl Network interface real time
 

To print out Received and Send traffic per network interface 4 times in a raw

sar-sysstats-network-traffic-statistics-screenshot
 

[hipo@server ~ ] $ sar -n DEV 1 4


To continusly monitor all network interfaces I/O traffic

[hipo@server ~ ] $ sar -n DEV 1


To only monitor a certain network interface lets say loopback interface (127.0.0.1) received / transmitted bytes

[hipo@server yum.repos.d] $  sar -n DEV 1 2|grep -i lo
06:29:53 PM        lo      0.00      0.00      0.00      0.00      0.00      0.00      0.00      0.00
06:29:54 PM        lo      0.00      0.00      0.00      0.00      0.00      0.00      0.00      0.00
Average:           lo      0.00      0.00      0.00      0.00      0.00      0.00      0.00      0.00


6. Monitor block devices use
 

To check block devices use 3 times in a raw
 

[hipo@server yum.repos.d] $ sar -d 1 3


sar-sysstats-blockdevice-statistics-screenshot
 

7. Output server monitoring data in CSV database structured format


For preparing a nice graphs with Excel from CSV strucuted file format, you can dump the collected data as so:

 [root@server yum.repos.d]# sadf -d /var/log/sa/sa27 — -n DEV | grep -v lo|head -n 10
server-name-fqdn;-1;2021-09-27 13:42:26 UTC;LINUX-RESTART    (8 CPU)
# hostname;interval;timestamp;IFACE;rxpck/s;txpck/s;rxkB/s;txkB/s;rxcmp/s;txcmp/s;rxmcst/s;%ifutil
server-name-fqdn;-1;2021-09-27 13:55:30 UTC;LINUX-RESTART    (8 CPU)
# hostname;interval;timestamp;IFACE;rxpck/s;txpck/s;rxkB/s;txkB/s;rxcmp/s;txcmp/s;rxmcst/s;%ifutil
server-name-fqdn;60;2021-09-27 14:01:01 UTC;eth1;19.42;16.12;1.94;1.68;0.00;0.00;0.00;0.00
server-name-fqdn;60;2021-09-27 14:01:01 UTC;eth0;7.18;9.65;0.55;0.78;0.00;0.00;0.00;0.00
server-name-fqdn;60;2021-09-27 14:01:01 UTC;eth2;5.65;5.13;0.42;0.39;0.00;0.00;0.00;0.00
server-name-fqdn;60;2021-09-27 14:02:01 UTC;eth1;18.90;15.55;1.89;1.60;0.00;0.00;0.00;0.00
server-name-fqdn;60;2021-09-27 14:02:01 UTC;eth0;7.15;9.63;0.55;0.74;0.00;0.00;0.00;0.00
server-name-fqdn;60;2021-09-27 14:02:01 UTC;eth2;5.67;5.15;0.42;0.39;0.00;0.00;0.00;0.00
…

To graph the output data you can use Excel / LibreOffice's Excel equivalent Calc or if you need to dump a CSV sar output and generate it on the fly from a script  use gnuplot 


What we've learned?


How to install and enable on cron sysstats on Redhat and CentOS 8 Linux ? 
How to continuously monitor CPU / Disk and Network, block devices, paging use and processes and threads used by the kernel per process ?  
As well as how to export previously collected data to CSV to import to database or for later use inrder to generate graphic presentation of data.
Cheers ! 🙂

 

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Posted in Linux, Monitoring, System Administration, Various | No Comments »

Stop haproxy log requests to /var/log/messages / Disable haproxy double logging

Friday, June 25th, 2021

haproxy-logo

On a CentOS Linux release 7.9.2009 (Core) I've running haproxies on two KVM virtual machines that are configured in a High Avaialability cluster with Corosync and Pacemaker, the machines are inherited from another admin (I did not install the servers hardware) and OS but have been received the system for support.
The old sysadmins seems to not care much about the system so they've left the haprxoy with Double logging one time under separate configured log in /var/log/haproxy/haproxyprod.log and each Haproxy TCP mode flown request has been double logged to /var/log/messages as well. As you can guess this shouldn't be so because we're wasting Hard drive space so to fix that I had to stop haproxy doble logging to /var/log/messages.

The logging is done under a separate local pointer local6 the /etc/haproxy/haproxyprod.cfg goes as follows:
 

[root@haproxy01 ~]# cat /etc/haproxy/haproxyprod.cfg

global
    # log <address> [len ] [max level [min level]]
    log 127.0.0.1 local6 debug
…

 

The logging is handled by rsyslog via the local6, so obviously to keep out the logging from /var/log/messages
The logging to the separate log file configuration in rsyslog is as follows:

local6.*                                                /var/log/haproxy/haproxyprod.log

It turned to be really easy to prevent haproxy get its requests log to /var/log/messages all I had to change is under /etc/rsyslogd.conf

local6.none config has to be placed for /var/log/messages the full line configuration in /etc/rsyslog.conf that stopped double logging is:

# Don't log private authentication messages!
*.info;mail.none;authpriv.none;cron.none;local5.none;local6.none                /var/log/messages

 

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Posted in Linux, Linux and FreeBSD Desktop, System Administration | 1 Comment »

Get daily E-Mail Reports statistics on postfix Linux mail server

Tuesday, July 14th, 2020

https://www.pc-freak.net/images/Postfix-email-server-logo.svg-1

I've had today a task at work to monitor a postfix mail send and received emails (MAIL FROM / RPCT TO) and get out a simple statistics on what kind of emails are coming and going out from the Postfix SMTP on a server?

Below is shortly explained how I did it plus you will learn how you can use something more advanced to get server mail count, delivery status, errors etc. daily.
 

1. Using a simple script to process /var/log/messages

For that I made a small script to do the trick, the script simply checks mail delivery logged information from /var/log/maillog process a bit sort and logs in a separate log daily.

#!/bin/sh
# Process /var/log/maillog extract from= and to= mails sort
# And log mails to $LOGF
# Author Georgi Georgiev 14.07.2020

DATE_FORM=$(date +'%m_%d_%y_%H_%M_%S_%h_%m');
LOG='/home/gge/mail_from_to-mails';
LOGF="$LOG.$DATE_FORM.log";
CUR_DATE=$(date +'%m_%d_%y_%T');
echo "Processing /var/log/maillog";
echo "Processing /var/log/maillog" > $LOGF;
echo >>$LOGF
echo "!!! $CUR_DATE # Sent MAIL FROM: addresses: !!!" >> $LOGF;
grep -E 'from=' /var/log/maillog|sed -e 's#=# #g'|awk '{ print $8 }'|sed -e 's#<# #g' -e 's#># #g' -e 's#\,##'|sort -rn|uniq >> $LOGF;

echo "!!! $CUR_DATE # Receive RCPT TO: addresses !!!" >>$LOGF;
grep -E 'to=' /var/log/maillog|sed -e 's#=# #g'|awk '{ print $8 }'|sed -e 's#<# #g' -e 's#># #g' -e 's#\,##'|sort -rn|uniq >> $LOGF;


You can get a copy of the mail_from_to_collect_mails_postfix.sh script here.

I've set the script to run via a crond scheduled job once early in the mornthing and I'll leave it like that for 5 days or so to get a good idea on what are the mailboxes that are receiving incoming mail.

The cron I've set to use is as follows:

# crontab -u root -l 
05 03 * * *     sh /home/gge/mail_from_to.sh >/dev/null 2>&1

 

This will be necessery later for a Email Server planned migration to relay its mail via another MTA host.

 

2. Getting More Robust Postifx Mail Statistics from logs


My little script is of course far from best solution to get postfix mail statistics from logs.

If you want something more professional and you need to have a daily report on what mails sent to mail server and mails sent from the MTA to give you information about the Email delivery queue status, number of successful and failed emails from a mail sender / recipient and a whole bunch of useful info you can use something more advanced such as pflogsumm perl script to get daily / weekly monthly mail delivery statistics.

What can pflogsumm do for you ?

 

 

Pflogsumm is a log analyzer/summarizer for the Postfix MTA. It is
designed to provide an overview of Postfix activity, with just enough
detail to give the administrator a “heads up” for potential trouble
spots and fixing any SMTP and email related issues.

Pflogsumm generates summaries and, in some cases, detailed reports of
mail server traffic volumes rejected and bounced email and server
warnings, errors, and panics.

At the time of writting this article it is living on jimsun.linxnet.com just in case if pflogsumm.pl's official download location disappears at some time in future here is pflogsumm-1.1.3.tar.gz mirror stored on www.pc-freak.net

– Install pflogsumm

Use of pflogsumm is pretty straight forward, you download unarchive the script to some location such as /usr/local/bin/pflogsumm.pl  add the script executable flag and you run it to create a Postfix Mail Log statistics report for you

wget http://jimsun.linxnet.com/downloads/pflogsumm-1.1.3.tar.gz -O /usr/local/src/pflogsumm-1.1.3.tar.gz

 

# mkdir -p /usr/local/src/
# cd /usr/local/src/
# tar -zxvf pflogsumm-1.1.3.tar.gz
# cd pflogsumm-1.1.3/

# mv /usr/local/pflogsumm-1.1.3/pflogsumm.pl /usr/local/bin/pflogsumm
# chmod a+x /usr/local/bin/pflogsumm


That's all, assuming you have perl installed on the system with some standard modules, we're now good to go: 

To give it a test report to the command line:

# /usr/local/bin/pflogsumm -d today /var/log/maillog

pflogsumm-log-summary-screenshot-linux-received-forwarded-bounced-rejected

To generate mail server use report and launch to some email of choice do:

# /usr/local/bin/pflogsumm -d today /var/log/maillog | mail -s Mailstats your-mail@your-domain.com


To make pflogsumm report everyday various interesting stuff such as (message deferrals, message bounce, details, smtp delivery failures, fatal errors, recipients by message size etc. add some cronjob like below to the server:

# /usr/sbin/pflogsumm -d yesterday /var/log/maillog | mail -s Mailstats | mail -s Mailstats your-mail@your-domain.com

If you need a GUI graphical mail monitoring in a Web Browser, you will need to install a webserver with a perl / cgi support,  RRDTools and MailGraph.

linux-monitoring-mail-server-with-mailgraph.cgi

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Posted in Linux, Postfix, System Administration | No Comments »

Linux: how to show all users crontab – List all cronjobs

Thursday, May 22nd, 2014

linux-unix-list-all-crontab-users-and-scripts
I'm doing another server services decomissioning and part of decomissioning plan is: Removing application and all related scripts from related machines (FTP, RSYNC, …). In project documentation I found a list with Cron enabled shell scripts:

#Cron tab excerpt:
1,11,21,31,41,51 * * * */webservices/tools/scripts/rsync_portal_sync.sh

that has to be deleted, however there was nowhere mentioned under what kind of credentials (with what kind of user) are the cron scripts running? Hence I had to look up all users that has cronjobs and find inside each user's cronjobs whether respective script is set to run. Herein I will explain shortly how I did that.

Cronjobs by default has few locations from where cronjobs are setupped depending on their run time schedule. First place I checked for the scripts is

/etc/crontabs # cat /etc/crontabs SHELL=/bin/sh
PATH=/usr/bin:/usr/sbin:/sbin:/bin:/usr/lib/news/bin
MAILTO=root
#
# check scripts in cron.hourly, cron.daily, cron.weekly, and cron.monthly
#
-*/15 * * * * root test -x /usr/lib/cron/run-crons && /usr/lib/cron/run-crons >/dev/null 2>&1
59 * * * * root rm -f /var/spool/cron/lastrun/cron.hourly
14 4 * * * root rm -f /var/spool/cron/lastrun/cron.daily
29 4 * * 6 root rm -f /var/spool/cron/lastrun/cron.weekly
44 4 1 * * root rm -f /var/spool/cron/lastrun/cron.monthly

I was not really user via what user is shell script run, therefore I looked first if someone doesn't set the script to run via crontab's standard locations for Daily, Hourly,Weekly and Monthly cronjobs:
 

a) Daily set cron jobs are in:

/etc/cron.daily/

b) Hourly set cron jobs:

/etc/cron.hourly

c) Weekly cron jobs are in:

/etc/cron.weekly/

d) Monthly cron jobs:

/etc/cron.monthly

There is also a location read by crontab for all Software (package distribution) specific cronjobs – all run under root user privileges.:

e) Software specific script cron jobs are in:

/etc/cron.d/  
As the system has about 327 users in /etc/passwd, checking each user's cronjob manually with:

# crontab -u UserName -l

was too much time consuming thus it is a good practice to list

/var/spool/cron/*

directory and to see which users has cron jobs defined

 

# ls -al /var/spool/cron/*
-rw——- 1 root root 11 2007-07-09 17:08 /var/spool/cron/deny

/var/spool/cron/lastrun:
total 0
drwxr-xr-x 2 root root 80 2014-05-22 11:15 .
drwx—— 4 root root 120 2008-02-25 15:45 ..
-rw-r–r– 1 root root 0 2014-05-22 04:15 cron.daily

/var/spool/cron/tabs:
total 8
drwx—— 2 root root 72 2014-04-03 03:43 .
drwx—— 4 root root 120 2008-02-25 15:45 ..
-rw——- 1 root root 4901 2014-04-03 03:43 root
 


/var/spool/cron – is crond (/usr/bin/cron/)'s spool directory.

# ls -al /var/spool/cron/tabs/ total 8
drwx------ 2 root root 72 2014-04-03 03:43 .
drwx------ 4 root root 120 2008-02-25 15:45 ..
-rw------- 1 root root 4901 2014-04-03 03:43 root
Above output shows only root superuser has defined crons.

Alternative way to check all user crontabs is via quick Linux one liner shell script show all user cron jobs

for i in $(cat /etc/passwd | sed -e "s#:# #g" | awk '{ print $1 }'); do
echo "user $i --- crontab ---";
crontab -u $i -l 2>&1 >/dev/null;
echo '----------';
done|less

Note that above short script has to run with root user. Enjoy 🙂

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Posted in Everyday Life, System Administration, Various | No Comments »

Linux: List last 10 (newest) and 10 oldest modified files in a directory with ls

Tuesday, April 8th, 2014

An useful thing on GNU / Linux sometimes is to list last or oldest modified files in directory.

Lets say you want to list last 10 modified files with ls from today / yesterday. Here is how:
 

ls -1t | head -10
my.cnf
wordperss_enabled_plugins.txt
newcerts/
mysql-hipo_pcfreakbiz.dump
NewArchive-Jan-10-15.zip
hipo_pcfreakbiz-mysqldb-any-out-1389361234.tgz
Tisho_Snimki/
wordpress/
wp-cron.php?doing_wp_cron=1.1
wp-cron.php

 

To list 10 oldest modified files on Linux:

 

ls -1t | tail -10
    my.cnf
    pcfreak_sql-15_10_05_2012
    mysql-tuning-primer*
    tuning-primer.sh*
    system-administration-services.html
    blog_backup_15_07_2012.tar.gz
    www-files/
    dump.sql
    courier-imap*
    djbdns-1.05.tar.gz


Cheers 😉

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Posted in System Administration | No Comments »

How to count lines of PHP source code in a directory (recursively)

Saturday, July 14th, 2012

Count PHP and other programming languages lines of source code (source code files count) recursively

Being able to count the number of PHP source code lines for a website is a major statistical information for timely auditting of projects and evaluating real Project Managment costs. It is inevitable process for any software project evaluation to count the number of source lines programmers has written.
In many small and middle sized software and website development companies, it is the system administrator task to provide information or script quickly something to give info on the exact total number of source lines for projects.

Even for personal use out of curiousity it is useful to know how many lines of PHP source code a wordpress or Joomla website (with the plugins) contains.
Anyone willing to count the number of PHP source code lines under one directory level, could do it with:::

serbver:~# cd /var/www/wordpress-website
server:/var/www/wordpress-website:# wc -l *.php
17 index.php
101 wp-activate.php
1612 wp-app.php
12 wp-atom.php
19 wp-blog-header.php
105 wp-comments-post.php
12 wp-commentsrss2.php
90 wp-config-sample.php
85 wp-config.php
104 wp-cron.php
12 wp-feed.php
58 wp-links-opml.php
59 wp-load.php
694 wp-login.php
236 wp-mail.php
17 wp-pass.php
12 wp-rdf.php
15 wp-register.php
12 wp-rss.php
12 wp-rss2.php
326 wp-settings.php
451 wp-signup.php
110 wp-trackback.php
109 xmlrpc.php
4280 total

This will count and show statistics, for each and every PHP source file within wordpress-website (non-recursively), to get only information about the total number of PHP source code lines within the directory, one could grep it, e.g.:::

server:/var/www/wordpress-website:# wc -l *.php |grep -i '\stotal$'
4280 total

The command grep -i '\stotal$' has \s in beginning and $ at the end of total keyword in order to omit erroneously matching PHP source code file names which contain total in file name; for example total.php …. total_blabla.php …. blabla_total_bla.php etc. etc.

The \s grep regular expression meaning is "put empty space", "$" is placed at the end of tital to indicate to regexp grep only for words ending in string total.

So far, so good … Now it is most common that instead of counting the PHP source code lines for a first directory level to count complete number of PHP, C, Python whatever source code lines recursively – i. e. (a source code of website or projects kept in multiple sub-directories). To count recursively lines of programming code for any existing filesystem directory use find in conjunction with xargs:::

server:/var/www/wp-website1# find . -name '*.php' | xargs wc -l
1079 ./wp-admin/includes/file.php
2105 ./wp-admin/includes/media.php
103 ./wp-admin/includes/list-table.php
1054 ./wp-admin/includes/class-wp-posts-list-table.php
105 ./wp-admin/index.php
109 ./wp-admin/network/user-new.php
100 ./wp-admin/link-manager.php
410 ./wp-admin/widgets.php
108 ./wp-content/plugins/akismet/widget.php
104 ./wp-content/plugins/google-analytics-for-wordpress/wp-gdata/wp-gdata.php
104 ./wp-content/plugins/cyr2lat-slugs/cyr2lat-slugs.php
,,,,
652239 total

As you see the cmd counts and displays the number of source code lines encountered in each and every file, for big directory structures the screen gets floated and passing | less is nice, e.g.:

find . -name '*.php' | xargs wc -l | less

Displaying lines of code for each file within the directories is sometimes unnecessery, whether just a total number of programming source code line is required, hence for scripting purposes it is useful to only get the source lines total num:::

server:/var/www/wp-website1# find . -name '*.php' | xargs wc -l | grep -i '\stotal$'

Another shorter and less CPU intensive one-liner to calculate the lines of codes is:::

server:/var/www/wp-website1# ( find ./ -name '*.php' -print0 | xargs -0 cat ) | wc -l

Here is one other shell script which displays all file names within a directory with the respective calculated lines of code

For more professional and bigger projects using pure Linux bash and command line scripting might not be the best approach. For counting huge number of programming source code and displaying various statistics concerning it, there are two other tools – SLOCCount
as well as clock (count lines of code)

Both tools, are written in Perl, so for IT managers concerned for speed of calculating projects source (if too frequent source audit is necessery) this tools might be a bit sluggish. However for most projects they should be of a great add on value, actually SLOCCount was already used for calculating the development costs of GNU / Linux and other projects of high importance for Free Software community and therefore it is proven it works well with ENORMOUS software source line code calculations written in programming languages of heterogenous origin.

sloccount and cloc packages are available in default Debian and Ubuntu Linux repositories, so if you're a Debilian user like me you're in luck:::

server:~# apt-cache search cloc$
cloc - statistics utility to count lines of code
server:~# apt-cache search sloccount$
sloccount - programs for counting physical source lines of code (SLOC)

Well that's all folks, Cheers en happy counting 😉

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Posted in Business Management, Programming, System Administration | 2 Comments »

How to quickly check unread Gmail emails on GNU / Linux – one liner script

Monday, April 2nd, 2012

I've hit an interesting article explaining how to check unread gmail email messages in Linux terminal. The original article is here

Being able to read your latest gmail emails in terminal/console is great thing, especially for console geeks like me.
Here is the one liner script:

curl -u GMAIL-USERNAME@gmail.com:SECRET-PASSWORD \
--silent "https://mail.google.com/mail/feed/atom" | tr -d '\n' \
| awk -F '' '{for (i=2; i<=NF; i++) {print $i}}' \
| sed -n "s/

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Twitter – Lynn Serafinn (@LynnSerafinn) has sent you a direct message on Twitter!
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NutshellMail – 32 New Messages for Sat 3/31 12:00 PM
Linux Users Group M. – [10] discussions, [5] comments and [8] jobs on LinkedIn
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Facebook – Your Weekly Facebook Page Update
Linux Users Group M. – [11] discussions, [9] comments and [16] jobs on LinkedIn

As you see this one liner uses curl to fetch the information from mail.google.com's atom feed and then uses awk and sed to parse the returned content and make it suitable for display.

If you want to use the script every now and then on a Linux server or your Linux desktop you can download the above code in a script file -quick_gmail_new_mail_check.sh here

Here is a screenshot of script's returned output:

Quick Gmail New Mail Check bash script screenshot

A good use of a modified version of the script is in conjunction with a 15 minutes cron job to launch for new gmail mails and launch your favourite desktop mail client.
This method is useful if you don't want a constant hanging Thunderbird or Evolution, pop3 / imap client on your system to just take up memory or dangle down the window list.
I've done a little modification to the script to simply, launch a predefined email reader program, if gmail atom feed returns new unread mails are available, check or download my check_gmail_unread_mail.sh here
Bear in mind, on occasions of errors with incorrect username or password, the script will not return any errors. The script is missing a properer error handling.Therefore, before you use the script make sure:

gmail_username='YOUR-USERNAME';
gmail_password='YOUR-PASSWORD';

are 100% correct.

To launch the script on 15 minutes cronjob, put it somewhere and place a cron in (non-root) user:

# crontab -u root -e
...
*/15 * * * * /path/to/check_gmail_unread_mail.sh

Once you read your new emails in lets say Thunderbird, close it and on the next delivered unread gmail mails, your mail client will pop up by itself again. Once the mail client is closed the script execution will be terminated.
Consised that if you get too frequently gmail emails, using the script might be annoying as every 15 minutes your mail client will be re-opened.

If you use any of the shell scripts, make sure there are well secured (make it owned only by you). The gmail username and pass are in plain text, so someone can steal your password, very easily. For a one user Linux desktops systems as my case, security is not such a big concern, putting my user only readable script permissions (e.g. chmod 0700)is enough.

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Posted in Linux, System Administration, Various | 2 Comments »

Auto restart Apache on High server load (bash shell script) – Fixing Apache server temporal overload issues

Saturday, March 24th, 2012

auto-restart-apache-on-high-load-bash-shell-script-fixing-apache-temporal-overload-issues

I've written a tiny script to check and restart, Apache if the server encounters, extremely high load avarage like for instance more than (>25). Below is an example of a server reaching a very high load avarage:;

server~:# uptime
13:46:59 up 2 days, 18:54, 1 user, load average: 58.09, 59.08, 60.05
load average: 0.09, 0.08, 0.08

Sometimes high load avarage is not a problem, as the server might have a very powerful hardware. A high load numbers is not always an indicator for a serious problems. Some 16 CPU dual core (2.18 Ghz) machine with 16GB of ram could probably work normally with a high load avarage like in the example. Anyhow as most servers are not so powerful having such a high load avarage, makes the machine hardly do its job routine.

In my specific, case one of our Debian Linux servers is periodically reaching to a very high load level numbers. When this happens the Apache webserver is often incapable to serve its incoming requests and starts lagging for clients. The only work-around is to stop the Apache server for a couple of seconds (10 or 20 seconds) and then start it again once the load avarage has dropped to less than "3".

If this temporary fix is not applied on time, the server load gets increased exponentially until all the server services (ssh, ftp … whatever) stop responding normally to requests and the server completely hangs …

Often this server overloads, are occuring at night time so I'm not logged in on the server and one such unexpected overload makes the server unreachable for hours.
To get around the sudden high periodic load avarage server increase, I've written a tiny bash script to monitor, the server load avarage and initiate an Apache server stop and start with a few seconds delay in between.

#!/bin/sh
# script to check server for extremely high load and restart Apache if the condition is matched
check=`cat /proc/loadavg | sed 's/\./ /' | awk '{print $1}'`
# define max load avarage when script is triggered
max_load='25'
# log file
high_load_log='/var/log/apache_high_load_restart.log';
# location of inidex.php to overwrite with temporary message
index_php_loc='/home/site/www/index.php';
# location to Apache init script
apache_init='/etc/init.d/apache2';
#
site_maintenance_msg="Site Maintenance in progress - We will be back online in a minute";
if [ $check -gt "$max_load" ]; then>
#25 is load average on 5 minutes
cp -rpf $index_php_loc $index_php_loc.bak_ap
echo "$site_maintenance_msg" > $index_php_loc
sleep 15;
if [ $check -gt "$max_load" ]; then
$apache_init stop
sleep 5;
$apache_init restart
echo "$(date) : Apache Restart due to excessive load | $check |" >> $high_load_log;
cp -rpf $index_php_loc.bak_ap $index_php_loc
fi
fi

The idea of the script is partially based on a forum thread – Auto Restart Apache on High Load – http://www.webhostingtalk.com/showthread.php?t=971304Here is a link to my restart_apache_on_high_load.sh script

The script is written in a way that it makes two "if" condition check ups, to assure 100% there is a constant high load avarage and not just a temporal 5 seconds load avarage jump. Once the first if is matched, the script first tries to reduce the server load by overwritting a the index.php, index.html script of the website with a one stating the server is ongoing a maintenance operations.
Temporary stopping the index page, often reduces the load in 10 seconds of time, so the second if case is not necessery at all. Sometimes, however this first "if" condition cannot decrease enough the load and the server load continues to stay too high, then the script second if comes to play and makes apache to be completely stopped via Apache init script do 2 secs delay and launch the apache server again.

The script also logs about, the load avarage encountered, while the server was overloaded and Apache webserver was restarted, so later I can check what time the server overload occured.
To make the script periodically run, I've scheduled the script to launch every 5 minutes as a cron job with the following cron:

# restart Apache if load is higher than 25
*/5 * * * * /usr/sbin/restart_apache_on_high_load.sh >/dev/null 2>&1

I have also another system which is running FreeBSD 7_2, which is having the same overload server problems as with the Linux host.
Copying the auto restart apache on high load script on FreeBSD didn't work out of the box. So I rewrote a little chunk of the script to make it running on the FreeBSD host. Hence, if you would like to auto restart Apache or any other service on FreeBSD server – get /usr/sbin/restart_apache_on_high_load_freebsd.sh my script and set it on cron on your BSD.

This script is just a temporary work around, however as its obvious that the frequency of the high overload will be rising with time and we will need to buy new server hardware to solve permanently the issues, anyways, until this happens the script does a great job 🙂

I'm aware there is also alternative way to auto restart Apache webserver on high server loads through using monit – utility for monitoring services on a Unix system. However as I didn't wanted to bother to run extra services in the background I decided to rather use the up presented script.

Interesting info to know is Apache module mod_overload exists – which can be used for checking load average. Using this module once load avarage is over a certain number apache can stop in its preforked processes current serving request, I've never tested it myself so I don't know how usable it is. As of time of writting it is in early stage version 0.2.2
If someone, have tried it and is happy with it on a busy hosting servers, please share with me if it is stable enough?

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Posted in FreeBSD, Programming, System Administration | 5 Comments »

Check and Restart Apache if it is malfunctioning (not returning HTML content) shell script

Monday, March 19th, 2012

Check and Restart Apache Webserver on Malfunction, Apache feather logo

One of the company Debian Lenny 5.0 Webservers, where I'm working as sys admin sometimes stops to properly server HTTP requests.
Whenever this oddity happens, the Apache server seems to be running okay but it is not failing to return requested content

I can see the webserver listens on port 80 and establishing connections to remote hosts – the apache processes show normally as I can see in netstat …:

apache:~# netstat -enp 80
Active Internet connections (w/o servers)
Proto Recv-Q Send-Q Local Address Foreign Address State User Inode PID/Program name
tcp 0 0 xxx.xxx.xxx.xx:80 46.253.9.36:5665 SYN_RECV 0 0 -
tcp 0 0 xxx.xxx.xxx.xx:80 78.157.26.24:5933 SYN_RECV 0 0 -
...

Also the apache forked child processes show normally in process list:

apache:~# ps axuwwf|grep -i apache
root 46748 0.0 0.0 112300 872 pts/1 S+ 18:07 0:00 \_ grep -i apache
root 42530 0.0 0.1 217392 6636 ? Ss Mar14 0:39 /usr/sbin/apache2 -k start
www-data 42535 0.0 0.0 147876 1488 ? S Mar14 0:01 \_ /usr/sbin/apache2 -k start
root 28747 0.0 0.1 218180 4792 ? Sl Mar14 0:00 \_ /usr/sbin/apache2 -k start
www-data 31787 0.0 0.1 219156 5832 ? S Mar14 0:00 | \_ /usr/sbin/apache2 -k start

In spite of that, in any client browser to any of the Apache (Virtual hosts) websites, there is no HTML content returned…
This weird problem continues until the Apache webserver is retarted.
Once webserver is restarted everything is back to normal.
I use Apache Check Apache shell script set on few remote hosts to regularly check with nmap if port 80 (www) of my server is open and responding, anyways this script just checks if the open and reachable and thus using it was unable to detect Apache wasn't able to return back HTML content.
To work around the malfunctions I wrote tiny script – retart_apache_if_empty_content_is_returned.sh

The scripts idea is very simple;
A request is made a remote defined host with lynx text browser, then the output of lines is counted, if the output returned by lynx -dump http://someurl.com is less than the number returned whether normally invoked, then the script triggers an apache init script restart.

I've set the script to periodically run in a cron job, every 5 minutes each hour.
# check if apache returns empty content with lynx and if yes restart and log it
*/5 * * * * /usr/sbin/restart_apache_if_empty_content.sh >/dev/null 2>&1

This is not perfect as sometimes still, there will be few minutes downtime, but at least the downside will not be few hours until I am informed ssh to the server and restart Apache manually …

A quick way to download and set from cron execution my script every 5 minutes use:

apache:~# cd /usr/sbin
apache:/usr/sbin# wget -q https://www.pc-freak.net/bscscr/restart_apache_if_empty_content.sh
apache:/usr/sbin# chmod +x restart_apache_if_empty_content.sh
apache:/usr/sbin# crontab -l > /tmp/file; echo '*/5 * * * *' /usr/sbin/restart_apache_if_empty_content.sh 2>&1 >/dev/null
 

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Posted in System Administration, Web and CMS | 7 Comments »

How to resolve (fix) WordPress wp-cron.php errors like “POST /wp-cron.php?doing_wp_cron HTTP/1.0″ 404” / What is wp-cron.php and what it does

Monday, March 12th, 2012

fix wordpress wp-cron.php 404 HTTP error, what is wp-cron.php schedule logo

One of the WordPress websites hosted on our dedicated server produces all the time a wp-cron.php 404 error messages like:

xxx.xxx.xxx.xxx - - [15/Apr/2010:06:32:12 -0600] "POST /wp-cron.php?doing_wp_cron HTTP/1.0

I did not know until recently, whatwp-cron.php does, so I checked in google and red a bit. Many of the places, I've red are aa bit unclear and doesn't give good exlanation on what exactly wp-cron.php does. I wrote this post in hope it will shed some more light on wp-config.php and how this major 404 issue is solved..
So

what is wp-cron.php doing?

 

  • wp-cron.php is acting like a cron scheduler for WordPress.
  • wp-cron.php is a wp file that controls routine actions for particular WordPress install.
  • Updates the data in SQL database on every, request, every day or every hour etc. – (depending on how it's set up.).
  • wp-cron.php executes automatically by default after EVERY PAGE LOAD!
  • Checks all pending comments for spam with Akismet (if akismet or anti-spam plugin alike is installed)
  • Sends all scheduled emails (e.g. sent a commentor email when someone comments on his comment functionality, sent newsletter subscribed persons emails etc.)
  • Post online scheduled articles for a day and time of particular day

Suppose you're writting a new post and you want to take advantage of WordPress functionality to schedule a post to appear Online at specific time:

What is wordpress wp-cron.php, Scheduling wordpress post screenshot

The Publish Immediately, field execution is being issued on the scheduled time thanks to the wp-cron.php periodic invocation.

Another example for wp-cron.php operation is in handling flushing of WP old HTML Caches generated by some wordpress caching plugin like W3 Total Cache
wp-cron.php takes care for dozens of other stuff silently in the background. That's why many wordpress plugins are depending heavily on wp-cron.php proper periodic execution. Therefore if something is wrong with wp-config.php, this makes wordpress based blog or website partially working or not working at all.
 

Our company wp-cron.php errors case

In our case the:
212.235.185.131 – – [15/Apr/2010:06:32:12 -0600] "POST /wp-cron.php?doing_wp_cron HTTP/1.0" 404
is occuring in Apache access.log (after each unique vistor request to wordpress!.), this is cause wp-cron.php is invoked on each new site visitor site request.
This puts a "vain load" on the Apache Server, attempting constatly to invoke the script … always returning not found 404 err.

As a consequence, the WP website experiences "weird" problems all the time. An illustration of a problem caused by the impoper wp-cron.php execution is when we are adding new plugins to WP.

Lets say a new wordpress extension is download, installed and enabled in order to add new useful functioanlity to the site.

Most of the time this new plugin would be malfunctioning if for example it is prepared to add some kind of new html form or change something on some or all the wordpress HTML generated pages.
This troubles are result of wp-config.php's inability to update settings in wp SQL database, after each new user request to our site.
So the newly added plugin website functionality is not showing up at all, until WP cache directory is manually deleted with rm -rf /var/www/blog/wp-content/cache/…

I don't know how thi whole wp-config.php mess occured, however my guess is whoever installed this wordpress has messed something in the install procedure.

Anyways, as I researched thoroughfully, I red many people complaining of having experienced same wp-config.php 404 errs. As I red, most of the people troubles were caused by their shared hosting prohibiting the wp-cron.php execution.
It appears many shared hostings providers choose, to disable the wordpress default wp-cron.php execution. The reason is probably the script puts heavy load on shared hosting servers and makes troubles with server overloads.

Anyhow, since our company server is adedicated server I can tell for sure in our case wordpress had no restrictions for how and when wp-cron.php is invoked.
I've seen also some posts online claiming, the wp-cron.php issues are caused of improper localhost records in /etc/hosts, after a thorough examination I did not found any hosts problems:

hipo@debian:~$ grep -i 127.0.0.1 /etc/hosts
127.0.0.1 localhost.localdomain localhost

You see from below paste, our server, /etc/hosts has perfectly correct 127.0.0.1 records.

Changing default way wp-cron.php is executed

As I've learned it is generally a good idea for WordPress based websites which contain tens of thousands of visitors, to alter the default way wp-cron.php is handled. Doing so will achieve some efficiency and improve server hardware utilization.
Invoking the script, after each visitor request can put a heavy "useless" burden on the server CPU. In most wordpress based websites, the script did not need to make frequent changes in the DB, as new comments in posts did not happen often. In most wordpress installs out there, big changes in the wordpress are not common.

Therefore, a good frequency to exec wp-cron.php, for wordpress blogs getting only a couple of user comments per hour is, half an hour cron routine.

To disable automatic invocation of wp-cron.php, after each visitor request open /var/www/blog/wp-config.php and nearby the line 30 or 40, put:

define('DISABLE_WP_CRON', true);

An important note to make here is that it makes sense the position in wp-config.php, where define('DISABLE_WP_CRON', true); is placed. If for instance you put it at the end of file or near the end of the file, this setting will not take affect.
With that said be sure to put the variable define, somewhere along the file initial defines or it will not work.

Next, with Apache non-root privileged user lets say www-data, httpd, www depending on the Linux distribution or BSD Unix type add a php CLI line to invoke wp-cron.php every half an hour:

linux:~# crontab -u www-data -e

0,30 * * * * cd /var/www/blog; /usr/bin/php /var/www/blog/wp-cron.php 2>&1 >/dev/null

To assure, the php CLI (Command Language Interface) interpreter is capable of properly interpreting the wp-cron.php, check wp-cron.php for syntax errors with cmd:

linux:~# php -l /var/www/blog/wp-cron.php
No syntax errors detected in /var/www/blog/wp-cron.php

That's all, 404 wp-cron.php error messages will not appear anymore in access.log! 🙂

Just for those who can find the root of the /wp-cron.php?doing_wp_cron HTTP/1.0" 404 and fix the issue in some other way (I'll be glad to know how?), there is also another external way to invoke wp-cron.php with a request directly to the webserver with short cron invocation via wget or lynx text browser.

– Here is how to call wp-cron.php every half an hour with lynxPut inside any non-privileged user, something like:
01,30 * * * * /usr/bin/lynx -dump "http://www.your-domain-url.com/wp-cron.php?doing_wp_cron" 2>&1 >/dev/null

– Call wp-cron.php every 30 mins with wget:

01,30 * * * * /usr/bin/wget -q "http://www.your-domain-url.com/wp-cron.php?doing_wp_cron"

Invoke the wp-cron.php less frequently, saves the server from processing the wp-cron.php thousands of useless times.

Altering the way wp-cron.php works should be seen immediately as the reduced server load should drop a bit.
Consider you might need to play with the script exec frequency until you get, best fit cron timing. For my company case there are only up to 3 new article posted a week, hence too high frequence of wp-cron.php invocations is useless.

With blog where new posts occur once a day a script schedule frequency of 6 up to 12 hours should be ok.

 

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Posted in System Administration, Web and CMS, Wordpress | 3 Comments »

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